Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00011 ATGGAACGGAATTGTTCCCTCCGGCGAAAGAGAGAGGCGGTGGTGAAGAAGGTAATTTGGCCAGCAATCCAGGGGCATTCTTGTCCAATATGTTTGAGCGAACTTGAATCTCGTTTCAGAGAAGCTGCGGTTCTGAGCCGCTGCCACCACGCTTACTGCACCGACTGCATCCGCCGTTGGAGTCACGTGCGCAGAGCGTGCCCTCTCTGCAATTCTGAGTTCACTTCTTGGTTCTCCATCCTCAGCCTCTCTTCCAGAACCTTCCGCAAGCACTTCTTACCTTCTCACGCTTTCAATTCCGATGCAAACCAACCACCACCGCCACTTCCATCTGGTAGAGTTGTTGGTAGGGCGAGGGTAGCGGTAAATAATGGCCGAAGCCGAAGGAATGCTTTGCCTCGGAGGAGATCGTTTGGGCGTGCTGGACTTGTGAGTGCAGATGTTATTGCTCACAGGAAGCTTCAGTGGCGTGCTAGCATATACAATCAAAGATTGGAACCTGATTCTGCAACCCTAAGGTGTCTTGAGCCAGGATGCAAAGGCTGCGGTCCATGCAACTTGCTCCTTTCCATGGGACTCAATCTGTTAGGGAATGGAACAAGAAAAGATGCTGTGAAAAGGGACATTCTTCAGCGGATTGAGCCATGGATAATGAGGGAGCTACAAGCCATCTTAGGGGACCCAGATCCAACTGTCATTGTTCATGTGGCCACCTCGCAGTTCATCACTTGGCTAGAAGAGAAGGCGAGATCGCCATCTCAGCACCTTCATGTTGGAGATAGCTTCATTGCACCTCTTCGTCCATTCCTACATGATAAAGCAACTATCTTTTGGCATGAGCTAAGCCGTTTTGCATTGGGTTGTCACAACATGGATACCTACGATGAGGTCGTCGAATATAAGCGACAGGAGTGA 915 0.5027 MERNCSLRRKREAVVKKVIWPAIQGHSCPICLSELESRFREAAVLSRCHHAYCTDCIRRWSHVRRACPLCNSEFTSWFSILSLSSRTFRKHFLPSHAFNSDANQPPPPLPSGRVVGRARVAVNNGRSRRNALPRRRSFGRAGLVSADVIAHRKLQWRASIYNQRLEPDSATLRCLEPGCKGCGPCNLLLSMGLNLLGNGTRKDAVKRDILQRIEPWIMRELQAILGDPDPTVIVHVATSQFITWLEEKARSPSQHLHVGDSFIAPLRPFLHDKATIFWHELSRFALGCHNMDTYDEVVEYKRQE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00011 304 ProSiteProfiles Zinc finger RING-type profile. 28 71 IPR001841 -
Stsc10g00011 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TOPORS 15 302 - -
Stsc10g00011 304 Pfam Ring finger domain 27 71 IPR001841 -
Stsc10g00011 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 85 IPR013083 -
Stsc10g00011 304 SMART ring_2 28 70 IPR001841 -
Stsc10g00011 304 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Stsc10g00011 304 SUPERFAMILY RING/U-box 20 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00011 Stsc-Chr10 45896 47865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00011 9 282 C3H Transcription Factor Family AT2G39100 44.681 2.06e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00011 - - adu:107464375 489.574