Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00005 ATGGGGAGGCCCTCAAAATCTAACCCTTCTTCCGACGACGAAGCGCCGTCGAATGCCTCTGACTCCGATTCCGATTCCGGTTCTGAAGAGCAACTTCCCAACGACCAGATCAACGAACAAGAAGACGACGAGGAGCTCGAAGAGGTTGCTCGCTCCGCTAGCTCTGGCGATGACGATACTGCGCCCGATGAACCTGCTGGAGATGCCGACGACGATGAACAGGATGAAGGTAATGCTGACACTGAGGTTAGCAAGCGCGAGAAGGCGAGGTTGAAAGAAATGCAGAAATTGAAGAAGCAGAAGATTCAGGAGATTTTGGATGAACAAAATGCAACTATTGATGCTGATATGAACAATAAAGGAAAGGGCCGTTTGAAGTATCTGTTGCAGCAAACGGAGATTTTTGCTCATTTTGCCAAAGGTGCACAATCTTCTTCTCAGAAGAAGACAAAGGGAAGGGGGCGCCATGCATCGAAAGTGACTGAAGAAGAGGAAGATGAAGAATATCTTAAGGAAGAAGAAGATGGTTTGGCAAGCACGCGTCTTGTAACACAACCATCATGTATCCAAGGGAAGATGAGGGATTATCAACTTGCTGGGTTGAACTGGCTCATACGATTGTATGAGAATGGTATAAACGGAATTCTGGCAGATGAAATGGGTCTTGGGAAAACATTACAAACTATATCATTGTTAGGCTATTTATATGAATTCAGAGGAATAAAGGGCCCTCATATGGTTGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTGTTTTGCGAGCAATAAAGTTCCTTGGTAACCCTGATGAAAGGAGGCATATACGAGAGGAGTTATTGGTTGCTGGGAAATTTGATGTATGTGTTACAAGTTTTGAAATGGTTATCAAGGAGAAATCTGCACTGCGTCGATTTAGTTGGCGTTACATAATTATCGATGAGGCCCACAGAATTAAGAATGAGAACTCCCTCCTTTCCAAGACAATGAGACTCTACAATACAAACTATCGACTCCTTATAACTGGGACACCACTACAAAACAATCTTCATGAACTCTGGGCTCTTCTCAATTTTCTTCTGCCTGAAATCTTCAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGGTGAAAATGACCAGCAGGAGGTTGTTCAACAATTACACAAGGTCCTTCGTCCATTTCTCCTTCGGAGGCTGAAGTCAGATGTTGAGAAAGGGCTGCCTCCAAAAAAGGAGACTATTCTCAAAGTAGGCATGTCACAAATGCAGAAGCAGTACTATAGGGCACTACTACAGAAAGATCTAGAGGTTGTCAATGCTGGTGGAGAACGAAAACGTCTCCTCAACATAGCAATGCAACTGCGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCCGGTCCTCCCTATACAACAGGAGACCATCTTGTCACAAATGCTGGAAAAATGGTTCTATTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGATTCCCGGGTCCTTATATTTTCGCAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTGATGTATCGGGGATATCAATATTGCCGAATAGATGGCANNNNNNNNNNCACTGGTGGAGAAGATCGTGATGCTTCCATTGAAGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTCGGCATCAATCTTGCTACTGCTGATGTTGTCATTCTTTATGATAGTGACTGGAACCCACAAGTTGACCTGCAGGCTCAGGATCGCGCTCATAGGATTGGACAGAAGAAAGAAGTACAAGTTTTCCGATTTTGCACTGAGTATACAATTGAAGAGAAAGTAATTGAAAGGGCTTACAAAAAGCTCGCACTTGATGCTCTGGTGATTCAGCAAGGTCGATTAGCTGAGCAGAAGACTGTAAATAAGGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTCAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAAGAAGCTACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGACGCTATCAAATTTAAGATGGATGACAATGCTGAGCTTTATGATTTTGATGATGATAAGGACGAGAACAAATTTGATTTCAAAAAGATTGTGAGTGAAAATTGGATTGAGCCACCGAGAAGAGAGCGGAAGCGCAATTACTCAGAATCTGAATACTTCAAGCAAACACTGCGCCAAGGAGGTCCTACTAAACCGAAGGAGCCCCGCATTCCCAGGATGCCTCAACTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAAGTGAAAGACTCCATAGAGGTCGATGAACCAGAAGAGGTGGGAGATCCACTGACTGCTGAAGAGTTGGAAGAAAAGGAGCAGCTGCTAGAGGAGGGATTTTCGTCATGGAGCCGGAGGGATTTTAATACTTTCGTTAGGGCCTGTGAAAAATATGGCCGAAATGATATTAAAGGTATTGCTTCTGAGATGGAAGGAAAAACAGAAGATGAAGTTGAGAGATATGCGTTAGTCTTCAAAGAAAGATACAAGGAATTAAACGATTATGACAGAATTATTAAAAACATTGAAAGAGGGGAGGCTAGAATATCCCGGAAAGATGAGATTATGAAAGCAATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGTTAGAACTAAAGATACAATATGGGCAAAACAAAGGGAAGTTATATAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGGTATGGGAATTGGGATGAACTCAAGGCAGCATTTCGAATGTCACCTTTGTTTCGATTTGATTGGTTTGTCAAGTCTCGCACAACACAAGAACTAACAAGGAGGTGCGACACCCTTATTCGCCTTGTTGAGAAGGAAAACCAAGAATATGATGAAAGAGAGAGACAGGCTCGTAAGGAGAAGAAACTTGCCAAGAGTAGTACACCATCAAAGCGTAACATGCCAAGACAGACAGAGTCTCCATCTTCGAAGAAGCGCAAGCAGTTGACTATGGATAACTTTGTAAGCTCGGGAAAGAAGAAAAAGTAA 3213 0.4214 MGRPSKSNPSSDDEAPSNASDSDSDSGSEEQLPNDQINEQEDDEELEEVARSASSGDDDTAPDEPAGDADDDEQDEGNADTEVSKREKARLKEMQKLKKQKIQEILDEQNATIDADMNNKGKGRLKYLLQQTEIFAHFAKGAQSSSQKKTKGRGRHASKVTEEEEDEEYLKEEEDGLASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLYEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGXXXXTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNAELYDFDDDKDENKFDFKKIVSENWIEPPRRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIEVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRRDFNTFVRACEKYGRNDIKGIASEMEGKTEDEVERYALVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAKSSTPSKRNMPRQTESPSSKKRKQLTMDNFVSSGKKKK 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00005 1070 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 77 1057 - -
Stsc10g00005 1070 Coils Coil 84 111 - -
Stsc10g00005 1070 SUPERFAMILY Homeodomain-like 850 900 IPR009057 -
Stsc10g00005 1070 Gene3D ISWI, HAND domain 748 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Stsc10g00005 1070 MobiDBLite consensus disorder prediction 1 34 - -
Stsc10g00005 1070 FunFam Chromatin-remodeling complex ATPase 194 409 - -
Stsc10g00005 1070 Pfam HAND 760 843 IPR015194 GO:0003677|GO:0006338|GO:0031491
Stsc10g00005 1070 Gene3D - 847 901 - -
Stsc10g00005 1070 MobiDBLite consensus disorder prediction 79 96 - -
Stsc10g00005 1070 Pfam Helicase conserved C-terminal domain 496 611 IPR001650 -
Stsc10g00005 1070 MobiDBLite consensus disorder prediction 145 167 - -
Stsc10g00005 1070 CDD DEXHc_SMARCA1_SMARCA5 190 410 IPR044754 GO:0005524
Stsc10g00005 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 408 IPR027417 -
Stsc10g00005 1070 MobiDBLite consensus disorder prediction 1018 1070 - -
Stsc10g00005 1070 Pfam SLIDE 904 1014 IPR015195 GO:0003677|GO:0005634|GO:0006338
Stsc10g00005 1070 CDD SF2_C_SNF 494 622 - -
Stsc10g00005 1070 Gene3D - 194 409 IPR038718 -
Stsc10g00005 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 414 709 - -
Stsc10g00005 1070 SMART sant 949 1010 IPR001005 -
Stsc10g00005 1070 SMART sant 847 896 IPR001005 -
Stsc10g00005 1070 CDD SANT 850 894 IPR001005 -
Stsc10g00005 1070 SMART ultradead3 189 381 IPR014001 -
Stsc10g00005 1070 ProSiteProfiles SANT domain profile. 846 898 IPR017884 -
Stsc10g00005 1070 SUPERFAMILY Homeodomain-like 902 1024 IPR009057 -
Stsc10g00005 1070 Gene3D - 935 1038 - -
Stsc10g00005 1070 MobiDBLite consensus disorder prediction 755 780 - -
Stsc10g00005 1070 Coils Coil 997 1031 - -
Stsc10g00005 1070 Gene3D iswi atpase 902 934 - -
Stsc10g00005 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 847 901 - -
Stsc10g00005 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 935 1038 - -
Stsc10g00005 1070 MobiDBLite consensus disorder prediction 1 96 - -
Stsc10g00005 1070 Gene3D - 414 709 IPR027417 -
Stsc10g00005 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 748 846 - -
Stsc10g00005 1070 MobiDBLite consensus disorder prediction 1018 1035 - -
Stsc10g00005 1070 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 759 849 IPR036306 GO:0003677|GO:0006338|GO:0031491
Stsc10g00005 1070 Pfam SNF2-related domain 206 473 IPR000330 GO:0005524|GO:0140658
Stsc10g00005 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 694 IPR027417 -
Stsc10g00005 1070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 652 IPR001650 -
Stsc10g00005 1070 SMART helicmild6 524 611 IPR001650 -
Stsc10g00005 1070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Stsc10g00005 1070 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00005 Stsc-Chr10 18830 26839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00005 214 638 RAD5 or RAD16-like Gene Family AT1G02670 26.969 8.51e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc10g00005 SNF2_N 2.9e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00005 K11654 - gmx:100791510 1882.07