Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc10g00002 ATGAAAGCTCAAAGCGACTGTGGCGGTGCAGAGCGTTACAGAAGGTTGAAGATGAATCGCATGTTCACTCAGCTTCAGGCCATCATCCCACGCCCCCAATCCAAGGCTACAAAGGAAGTGATTGTAACTGACACAATTAGATATATAAAGGAGCTTGAGAGGAAGAAGCAGAATTTGGAGCAGATCAAGGACCTTCAACTACAAGCCCATGCCAGTGGGACCACCTTCACGCTTCCATGCATTGCCAATACAGATAATTGCTCCGTCACTGTCACTGTCTCCGCCAACGTCGCGTTTTTCGGCATTCGGACGGTGGCTCGCCGCGGTTTGATCACCATGATTTTGGAGGTGTTCAGCAACCACGAGGCTGAAATTTTGGCTGCAAATGTATCGGTTAATCAAGGGATTTTGACATTTGCAGTCACGGCGTTGTTGCAAGTTGTTGGTGATGGAGGAGGAGAATGTGCGGTTGAGGTGATTAAGAGAGAGATCATGACTTTGTAG 504 0.4821 MKAQSDCGGAERYRRLKMNRMFTQLQAIIPRPQSKATKEVIVTDTIRYIKELERKKQNLEQIKDLQLQAHASGTTFTLPCIANTDNCSVTVTVSANVAFFGIRTVARRGLITMILEVFSNHEAEILAANVSVNQGILTFAVTALLQVVGDGGGECAVEVIKREIMTL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc10g00002 167 Coils Coil 42 69 - -
Stsc10g00002 167 Gene3D - 9 74 IPR036638 GO:0046983
Stsc10g00002 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 72 IPR036638 GO:0046983
Stsc10g00002 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 52 IPR011598 GO:0046983
Stsc10g00002 167 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 10 143 IPR044278 GO:0003700|GO:0006355|GO:0009960
Stsc10g00002 167 Pfam Helix-loop-helix DNA-binding domain 10 53 IPR011598 GO:0046983
Stsc10g00002 167 SMART finulus 8 58 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc10g00002 Stsc-Chr10 6152 6986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc10g00002 11 68 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 44.828 1.95e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc10g00002 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc10g00002 - - ahf:112704712 267.314