Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1097g00002 ATGACAAGATTCAAGGTAGCAGATATTCCGGGATTGGTATGTAAAGGGGCACCAGATTTCTGTACAGTATATGTGGTTTCAAAAGGAAAGATTCAATCAACAAGATCAGCTTCTCGTCCTGCTCCTTTCCTTTCTCCATTGCTTACTCAATCCACCAATTTCAATTCAGCCCCACGTTTGCCACTTCCCAAAGGCCTTGAAAGGCAATCATTTGATGGACCACGTAGATCACAAGACACAATAAGGTCGCCATTAACTCGAAAAGGAGTGAGTGAGAGATCATATACAGAAATATCATTGCCAGATTCAGACATTACATTTGTAAGTTCTGGAAGATCAAGCGTAGACCGGATGATTCCGTCGTTATACCTCGGATCGGATCACGGAATGTCGAATCCTCGACTATCATATGGCTCTAATCTATCCGGCTGCTCTGATATCATCAACATGGATAATGGAAACTGCAGCTTTGAATCAATTCTTCATCATCATCATCCAAGGATGTCTATGGATAGTCATGGCTCTCCTGAATTCTCATACATATCACATGATAGTGATGGTGTTTTATCTTCTTATTCCAATCCCGCGGATGATGTAGAGTTTGAAATGAGGAGGCTGAAGTTGGAGTTGAAGCAAACAATGGAAATGTACAGCACAGCATGTAAAGAAGCTCTCACAGCGAAACAGAAGGCTATAGAACTTCAACGTTGGAAGCTAGAAGAAGAGAGGAAACTAGAGGAGGCAAAGCTAGGAGAAGAAGCTGCATTAGCAATTGTAGAAATGGAGAAAGCAAAATCAAAAGCAGCTCTTGAGGCAGCTGATGCACAAAAGAGGATCGCAGAGCTAGAAGCACATAAGAGACTCAATGCTGAAATGAAAGCAATTAGAGAAGCTGAAGCAAAGAAGAGAGCACTTGATGCTCTTGCACAAAATGAGTTGAGGTGTAGAAAGTACTCAATTGAGGAAATTGAAGAAGCAACCAACCATTTTGCAAACTCCATGAAAATCGGAGAAGGCGGTTACGGTCCGGTTTTTAAGTGCCTTCTTGATCATACACCTGTTGCTGTCAAGGTTCTACGTCCTGATGCAGCACAAGGACGGTCCCAGTTTCAAAGAGAGGTTGAGGTACTAAGTTGCATCCGGCATCCAAACATGGTACTTCTCCTAGGAGCCTGTCCGGAATACGGATGCCTTGTCTACGAATACTTGGCAAACGGAAGTTTAGACGATCGCCTCTTTTGTAGAGGAAACACTCCCCCACTTCCTTGGCAAATACGGTTCAAAATAGCAGCCGAAATCGGCACCGGCTTGTTATTCCTCCACCAAACAAAGCCAGAGCCTCTTGTCCATAGAGATTTGAAGCCAGCCAATATCTTGCTTGACCGAAACTGCGTCGCCAAGATCAGCGACGTAGGCCTTGCTAGGCTAGTCCCTCCGTCCGTCGCTGACTCAGTCACACAATACCATATGACATCTGCTGCTGGAACATTTTGCTACATAGACCCTGAGTACCAGCAAACCGGAATGCTAGGTGTAAAATCTGATGTATACTCTCTTGGGATCATTTTTTTGCAAATTTTGACGGCGAAACCACCAATGGGATTGACTCATCATGTTGAGAAAGCTATTGAGAAGGGAACATTTGCGGATATGCTTGATCCTAATGTGTCTGATTGGCCAATGGAGGAGGCCTTGAGCCTCGCGAAAATTTCGATCCAATGTTCTGAGCTAAGGCGAAAGGATAGACCGGATCTCGGCAAGGAAGTCCTACCAATACTAGATGGGCTAAGGACATTGGCTGAAAATGGTGATCAACATTTCAGTGGCTATGTTAGCCCATCCAACCAGAGCCAGGTTTCTATTCAGTTGGATGGAGCCTCTTCTCCACTTGATTATTCTGGGGAAAGCCCAAGGAAGTCATCCATTTCAACCCCTTAG 1938 0.4443 MTRFKVADIPGLVCKGAPDFCTVYVVSKGKIQSTRSASRPAPFLSPLLTQSTNFNSAPRLPLPKGLERQSFDGPRRSQDTIRSPLTRKGVSERSYTEISLPDSDITFVSSGRSSVDRMIPSLYLGSDHGMSNPRLSYGSNLSGCSDIINMDNGNCSFESILHHHHPRMSMDSHGSPEFSYISHDSDGVLSSYSNPADDVEFEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKLEEERKLEEAKLGEEAALAIVEMEKAKSKAALEAADAQKRIAELEAHKRLNAEMKAIREAEAKKRALDALAQNELRCRKYSIEEIEEATNHFANSMKIGEGGYGPVFKCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEYLANGSLDDRLFCRGNTPPLPWQIRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNCVAKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQILTAKPPMGLTHHVEKAIEKGTFADMLDPNVSDWPMEEALSLAKISIQCSELRRKDRPDLGKEVLPILDGLRTLAENGDQHFSGYVSPSNQSQVSIQLDGASSPLDYSGESPRKSSISTP 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1097g00002 645 MobiDBLite consensus disorder prediction 76 94 - -
Stsc1097g00002 645 SUPERFAMILY Protein kinase-like (PK-like) 313 585 IPR011009 -
Stsc1097g00002 645 Coils Coil 288 308 - -
Stsc1097g00002 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Stsc1097g00002 645 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 302 402 - -
Stsc1097g00002 645 SMART serkin_6 330 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1097g00002 645 Pfam Protein kinase domain 332 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1097g00002 645 Gene3D Phosphorylase Kinase; domain 1 308 402 - -
Stsc1097g00002 645 ProSiteProfiles Protein kinase domain profile. 330 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1097g00002 645 Gene3D Transferase(Phosphotransferase) domain 1 403 610 - -
Stsc1097g00002 645 FunFam U-box domain-containing protein 51 403 603 - -
Stsc1097g00002 645 Coils Coil 222 242 - -
Stsc1097g00002 645 Coils Coil 258 285 - -
Stsc1097g00002 645 MobiDBLite consensus disorder prediction 54 94 - -
Stsc1097g00002 645 Coils Coil 196 216 - -
Stsc1097g00002 645 PANTHER OS02G0152300 PROTEIN 7 618 - -
Stsc1097g00002 645 MobiDBLite consensus disorder prediction 609 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1097g00002 Stsc-Chr1097 11310 17244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1097g00002 1 621 Receptor kinase-like Gene Family AT1G78940 59.594 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc1097g00002 Pkinase 7.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1097g00002 - - gmx:100779981 829.706