Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc108g00004 ATGTCAATGCAACCTCCTAACGAAGTAGCTTCTTCTGCTGCAAATCTCAACATGCTGAACCTTCCAACACAACAATTCTTAAATGGTTTGCCACCGCCGCCGCCACAAAGAAACATCCCTCCAATCTATGTATCCGGAGTTTCAGCTCAGAGGTTGAAAGAATTTTTCCACCAACAGCAGTGCCGGCTAGCTGACAACAACATTAGTTTTTGGAGGAACTTTGTGGCTGAGTTTTTCACTCCGAATGGAAGGAAGAAGTTCTGCTTCTCCTTGTATCCGAGACTAAAAAACCCTGCCAGTTTTTTCCTCAGTGATATGAGAACATGCCAGGCATGCAGGAGGAATCCCTGCAATGGTTTTGAACTGTGTTACGAGGTTCTTCCAAGGCTTTTCAAGATGAAATATGAAAGTGGACTATTGGAAGAGAATCTTTTTTTGGACATTCCCAGAGAATACAGAGGCCTTTCTGGCCACATTGTTCTGTTCTGTCCAAAGGTAACAAGAGAAAGCTTGTTCCACAAGTTTCGCGTCGTCCACGAAGGTTCCCTCCGAATAGTCTTCTCCCCTAACCTCAAAATACGCTCTTTGGAATTCTGCGCGAAGCGCCACGAAGTGCTCATCTGCAGAAGCTATCTGGTTCCTGATGTGAATCAGATTGATGATGCTGTTTCAAAGTTCTGTGATTTGGTAGCCAATAATATTAACAACAACAATGTTTCTGCTGAGGTGTTTGGAGAATGTAGCAATAACCTGGTTGCAAGAACACATGAACTGGCTAAGAAATTGGAACTTCCAATACTTGATGAGTATGTAGGGTTCGCTAAGAGACATGTTAGCACTGGAATTGTTGATCACGGTGAAGATCAATTGCAGCAGCAAAATGGGGATCATGCTTTGAATAATGGTGCTGAGAACAATGAACAAACACCTGGTGTGCAAATTGGTTCTTCTAGGCATGGTACTTCAGCCACCACAAGCACTGTTCAGATTCATAATTCTGTTGATTCCAGGGCTCCAAATTCAGAGAACAATGAAGAGAATGTTCATATTCAATCCCAAATTCCCTCAGGTAATTAA 1077 0.428 MSMQPPNEVASSAANLNMLNLPTQQFLNGLPPPPPQRNIPPIYVSGVSAQRLKEFFHQQQCRLADNNISFWRNFVAEFFTPNGRKKFCFSLYPRLKNPASFFLSDMRTCQACRRNPCNGFELCYEVLPRLFKMKYESGLLEENLFLDIPREYRGLSGHIVLFCPKVTRESLFHKFRVVHEGSLRIVFSPNLKIRSLEFCAKRHEVLICRSYLVPDVNQIDDAVSKFCDLVANNINNNNVSAEVFGECSNNLVARTHELAKKLELPILDEYVGFAKRHVSTGIVDHGEDQLQQQNGDHALNNGAENNEQTPGVQIGSSRHGTSATTSTVQIHNSVDSRAPNSENNEENVHIQSQIPSGN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc108g00004 358 MobiDBLite consensus disorder prediction 293 358 - -
Stsc108g00004 358 PANTHER LIM DOMAIN-BINDING PROTEIN 24 278 IPR029005 -
Stsc108g00004 358 Pfam LIM-domain binding protein 51 241 IPR029005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc108g00004 Stsc-Chr108 62543 63719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc108g00004 39 278 C2H2 Transcription Factor Family AT1G43850 47.917 1.20e-68 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc108g00004 - - adu:107458399 410.994