Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1082g00001 ATGGCCTCAGATCAGCACTTCAGGGATGCTGCTCATGAAATCAATACCTTCCAAGACATACCCTCCTTACAGAAGTGGAAATCTTCCACCAATGCCAATGCAGATTCCAGTCGAAACGCCAATGAAAGATTCGACTGCAACATCTGTCTAGAATGCGTGCAAGAACCGGTAGTAACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCATCCGAATCCGCAATGTCCGGTGTGCAAATCGGAGGTTTCTCAATCCTCCCTGGTTCCACTCTACGGCCGCACTCCGTCCCAGAAACATGCTCACCAATTAGGCTCTTCGATACCGAGAAGACCCCTCGGCCCGAGACCAGCTGCACCTGTTCTACAATCTACTTCTCAAACTAATCAACCTCGGCAACGGTTCGACTCGATTCAAAGCAGTTACACTTCACCAGTGCTAAGCACAATTGGTTCATCATCATTACATTCAACATCTGGAATTTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAACCAATTGACAAACATGTATACATATCCAAATTCTTATTGTCTTTCAGGGAGTAGTAACCCAAGGATCAGAAGGCAGTTAATGGAAGCTGATGAGTCACTCAGTAGAATATGCTTTTTCCTCTTCTGCTGTTTAGTTATGTGTCTTCTCTTGTTCTGA 720 0.4514 MASDQHFRDAAHEINTFQDIPSLQKWKSSTNANADSSRNANERFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEHPNPQCPVCKSEVSQSSLVPLYGRTPSQKHAHQLGSSIPRRPLGPRPAAPVLQSTSQTNQPRQRFDSIQSSYTSPVLSTIGSSSLHSTSGIFGEMIYARVFGNQLTNMYTYPNSYCLSGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1082g00001 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 126 IPR013083 -
Stsc1082g00001 239 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Stsc1082g00001 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc1082g00001 239 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Stsc1082g00001 239 SUPERFAMILY RING/U-box 36 101 - -
Stsc1082g00001 239 SMART ring_2 46 94 IPR001841 -
Stsc1082g00001 239 MobiDBLite consensus disorder prediction 112 148 - -
Stsc1082g00001 239 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1082g00001 Stsc-Chr1082 3463 6771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1082g00001 39 239 C3H Transcription Factor Family AT4G28270 39.806 2.91e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1082g00001 K10666 - gmx:100785491 258.455