Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc107g00018 ATGAAGAACAAGTCAAAGTTTGTTGGGGTGAGGCAAAGAGCTTCTGGAAAATGGGCAGCAGAGATCAAAGATACTTCAAAGCAGATTAGGATTTGGCTTGGAACATATCAAACTGCTGAGGAAGCTGCTAGAGCCTATGATGAAGCTGCTTTTCTCCTTAGAGGTTCCAACACTCGCACCAACTTCAACACTCGTCACGCCATTGCTTCCGATTCTCCTGTATCTCTCAAAATCAGAACCCTGCTCCATCGTAGGGCCATCTCAAATCGAATTCAAAACCAATTCCCTATAGTTACTCCCAATGTTCAAGATGTTACCAATAACAACACGATGGTCAAGCAAGAAAACCATGCAAGTAGATGTAGTGGTAGTAGTGAAGGTGAGTCTTTACTTTGGGTTCATAACCAAGTTTTTGATAATGTTTATAGGCCAGAATTGAATATGATGAACTGCTCAAGGGGTCCTGTTGAACGAAATGAGTATCAGTTCGATTATTCATGGCCGTTAGCTCAACAAAGGATTAATGAATTACCAATATTATCACCAGAAAGTGGGTTCAATGAAGAAGGGCAACTGTCAGATTCACTTTTTTCCATGAATGAGGATGAAAATGAGCACGAGTGTGGTGTCAGTTATCCTCTCTCCCACTTGTTCTGCTTTGATTGA 666 0.4129 MKNKSKFVGVRQRASGKWAAEIKDTSKQIRIWLGTYQTAEEAARAYDEAAFLLRGSNTRTNFNTRHAIASDSPVSLKIRTLLHRRAISNRIQNQFPIVTPNVQDVTNNNTMVKQENHASRCSGSSEGESLLWVHNQVFDNVYRPELNMMNCSRGPVERNEYQFDYSWPLAQQRINELPILSPESGFNEEGQLSDSLFSMNEDENEHECGVSYPLSHLFCFD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc107g00018 221 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 116 - -
Stsc107g00018 221 FunFam ethylene-responsive transcription factor RAP2-11 5 64 - -
Stsc107g00018 221 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Stsc107g00018 221 CDD AP2 5 62 IPR001471 GO:0003700|GO:0006355
Stsc107g00018 221 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Stsc107g00018 221 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Stsc107g00018 221 Pfam AP2 domain 5 55 IPR001471 GO:0003700|GO:0006355
Stsc107g00018 221 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Stsc107g00018 221 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Stsc107g00018 221 SUPERFAMILY DNA-binding domain 5 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc107g00018 Stsc-Chr107 88633 89423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc107g00018 3 194 AP2-EREBP Transcription Factor Family AT5G19790 42.708 9.72e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc107g00018 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc107g00018 K09286 - gmx:100803832 226.483