Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc107g00010 ATGGCTAACTGGTTGGGAATCCTCATCCCTTTCTTGTCCTCCTTCTTGTTCATCATCTCAGCAGAAAGAATTTTCAGCAACCAATGCAAAGTAGCAAGTTGCAGCATGGATGGACCTTCCATCAGATTCCCCTTCAGGCTGAAAGGAACACAACCAGAATGGTGTAGCCATGATTCCTGGTTTGATCTTTCTTGCACTGATACCAACAACACAATGCTGCACCTGCCATTCCCTTTCAAAGCCTTATTAGTCAAAAGCATCAACTATACATCACAACTCATAACTCTCTCTTATCCTCAAGCCTGCTCCATTCACACACACATTCCACACTTTGACTTTTCTGTTTCTCCTTTTAGCTTCATTGATGACTCTCTACTCCACAATTATGCATTCTTCAACTGTTCCAGGATTGATAAGGACTACTTCCTAACATCTGGAAGCTTTTCTTGCCTTGATGTACCTGGATTTGAAGTTGTAGCAGTAAATTCTAATCAATTGATTGTTAATACTCCTCTATTGTCTTGCACTAGCATCCGCAGCAGTGTACAGTTGCCTAGTTCTTTGTTTGACAAGAACATTGATACTGTTCTTAAGTGGTTCCAACCAGATTGCAAAGACTGTGAAGATCACGGTGGGCGATGTGAAGTGAGAGGAAATGAATCCAATCATAGCCTTGAATGTATAGACCTCCCCCATAGTACTAAAGGTTTATCTAGAGGGAAAAAGCTTGCTGGTGAAATTCTAGGCCCTATTATGTTTCTATTTCTTGGAGTGGCAGCTTATTGTATCTATGTAGCTTGCAATGAAAGGCTGAGTTACATGAAGATCAAAAGGCTTTTGGAAGACTACAAAGCACTTAAGCCTGCAAGGTACTCTTATTCAGATATAAGAAGAATTACAAATCAGTTTAAGGAAGAACTGGGGCAAGGAGCCTATGGAACTGTCTTCAAAGGGAAGCTATGGGATGAAGTTGAGGTTGCTGTAAAGGTCTTAAATGCTCCATCAGGTAATGGCCAAGAGTTCATCAATGAAATGGAAGCAATGTGTCGAATTCACCATGTCAATGTAGCTCGCTTGGTCGGATATTGTTCTGATGGATCTAGAAGAGCTTTGGTATACGAATTCTTACCAAACGGTTCCTTGCAAAAATTCATTTCCTCAGCAGACACCAAAGATGTCTTTCTAGGCTGGGAAAAGCTACAAGATATTGCTCTCGGCATAGCCAAGGGAATCGAGTATCTTCACCAAGGATGTGAGAAAAGAATTTTACATTTTGATATCAAGCCTCATAATGTGCTGCTAGACAGCAATTTCACACCAAAAATCTCTGATTTTGGGTTAGCAAAGCTCTGTCCTATTGATCAAAGTATAGTTTCAATGACCACAGCTAGAGGTACTTTGGGCTACATTGCACCAGAGGTATTTTCTAGGAACTTTGGCAATTTATCGTGTAAATCGGATGTATATAGCTATGGAATGCTGCTGCTTGAGATGGTTGGTGGAAGAAAAATCACTGATGTGACAGAAGTAAATAGAAGCCATGTTTATTACCCTCAATGGATTTACAATCTTCTAGATAACAAAGAAGACATTAAAATCCATGTGGAAGGAAGTGAAGACACTAGAGTTGCAAAGAAGCTATCAATTGTGGGACTTTGGTGCATTCAGTGGCACCCGGCAAATCGTCCAACCATGAAAGATGTGCTTCAAATGCTGGAAAGACATGGGGAGGGGTTAGAGATGCCTCCTAATCCTTTTGCCTCTTCTACTACAATCAAAACAAGGGCTATATTTTCTAATGGAAGTCTGAACCAAGAACTAGATGTTATCTCAGAAATAGAGTGA 1845 0.4049 MANWLGILIPFLSSFLFIISAERIFSNQCKVASCSMDGPSIRFPFRLKGTQPEWCSHDSWFDLSCTDTNNTMLHLPFPFKALLVKSINYTSQLITLSYPQACSIHTHIPHFDFSVSPFSFIDDSLLHNYAFFNCSRIDKDYFLTSGSFSCLDVPGFEVVAVNSNQLIVNTPLLSCTSIRSSVQLPSSLFDKNIDTVLKWFQPDCKDCEDHGGRCEVRGNESNHSLECIDLPHSTKGLSRGKKLAGEILGPIMFLFLGVAAYCIYVACNERLSYMKIKRLLEDYKALKPARYSYSDIRRITNQFKEELGQGAYGTVFKGKLWDEVEVAVKVLNAPSGNGQEFINEMEAMCRIHHVNVARLVGYCSDGSRRALVYEFLPNGSLQKFISSADTKDVFLGWEKLQDIALGIAKGIEYLHQGCEKRILHFDIKPHNVLLDSNFTPKISDFGLAKLCPIDQSIVSMTTARGTLGYIAPEVFSRNFGNLSCKSDVYSYGMLLLEMVGGRKITDVTEVNRSHVYYPQWIYNLLDNKEDIKIHVEGSEDTRVAKKLSIVGLWCIQWHPANRPTMKDVLQMLERHGEGLEMPPNPFASSTTIKTRAIFSNGSLNQELDVISEIE 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc107g00010 614 Pfam Wall-associated receptor kinase galacturonan-binding 29 96 IPR025287 GO:0030247
Stsc107g00010 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Stsc107g00010 614 FunFam serine/threonine-protein kinase PBS1-like 272 375 - -
Stsc107g00010 614 Gene3D Phosphorylase Kinase; domain 1 276 375 - -
Stsc107g00010 614 SUPERFAMILY Protein kinase-like (PK-like) 286 573 IPR011009 -
Stsc107g00010 614 Pfam Protein kinase domain 303 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc107g00010 614 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Stsc107g00010 614 PANTHER RUST RESISTANCE KINASE LR10-RELATED 275 589 IPR045874 GO:0004672
Stsc107g00010 614 ProSiteProfiles Protein kinase domain profile. 301 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc107g00010 614 SMART serkin_6 301 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc107g00010 614 FunFam PR5-like receptor kinase 376 583 - -
Stsc107g00010 614 Gene3D Transferase(Phosphotransferase) domain 1 376 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc107g00010 Stsc-Chr107 52199 54267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc107g00010 203 613 Receptor kinase-like Gene Family AT1G66910 42.923 3.52e-107 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc107g00010 Pkinase 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc107g00010 - - tpra:123914140 840.876