Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc107g00006 ATGGCGACGCCCACCAAAGAACGCGAAAACTTCGTCTACACCGCCAAACTCGCTGAACAAGCCGAGCGCTATGAAGAAATGGTGGATGCAATGAAGAATGTAGCGAAGCTAAACGTGGAGTTGACGGTTGAGGAGCGAAACCTTCTGTCAGTTGGGTACAAGAACGTGGTTGGGGCTCGTAGGGCTTCATGGAGGATTCTGTCCTCCATCGAGCAGAAGGAAGAATCCAAAGGGAACGATGTTAGCGTGAAGCGGATCAAGGAGTATAGGAACAAAGTTGAATCTGAGTTGTCTACTATCTGCACTGATATCATGACTGTTATTGATGAACACCTTATTCCTTCTTCTTCTGCTGGTGAACCTAGTGTCTTCTTCTATAAGATGAAGGGCGACTATTATCGCTATCTGGCCGAATTCAAGACTGGAGATGACAGAAAGGAGGCTGCTGATCAGTCCATGAAAGCATATCAGGCGGCTTCTACTGCTGCAGAAGCTGAGTTACCTCCAACCCATCCCATCAGATTGGGTTTGGCTTTGAACTTCTCTGTTTTCTATTATGAAATTTTGAACTCTCCTGAAAGGGCCTGTCAACTTGCTAAGCAGGCATTTGATGTAGCGATCGCTGAGTTGGATACTCTTAGCGAAGAGTCTTACAAAGACAGCACGCTGATTATGCAGCTTCTGAGGGATAACCTTACCTTGTGGACCTCTGACATCCCTGAAGATGCAGCTGATGAACAAAAGGCAGAGTCTGCACAAGCTCCGCAAGGTGAAGACTGA 780 0.4692 MATPTKERENFVYTAKLAEQAERYEEMVDAMKNVAKLNVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEESKGNDVSVKRIKEYRNKVESELSTICTDIMTVIDEHLIPSSSAGEPSVFFYKMKGDYYRYLAEFKTGDDRKEAADQSMKAYQAASTAAEAELPPTHPIRLGLALNFSVFYYEILNSPERACQLAKQAFDVAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDAADEQKAESAQAPQGED 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc107g00006 259 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Stsc107g00006 259 PIRSF 14-3-3 2 249 IPR000308 -
Stsc107g00006 259 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Stsc107g00006 259 Gene3D - 1 250 IPR036815 -
Stsc107g00006 259 PANTHER 14-3-3 PROTEIN 8 239 IPR000308 -
Stsc107g00006 259 SMART 1433_4 8 249 IPR023410 -
Stsc107g00006 259 FunFam 14-3-3 protein epsilon 3 249 - -
Stsc107g00006 259 Coils Coil 14 34 - -
Stsc107g00006 259 Pfam 14-3-3 protein 15 236 IPR023410 -
Stsc107g00006 259 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Stsc107g00006 259 MobiDBLite consensus disorder prediction 239 259 - -
Stsc107g00006 259 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Stsc107g00006 259 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Stsc107g00006 259 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Stsc107g00006 259 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Stsc107g00006 259 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Stsc107g00006 259 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc107g00006 Stsc-Chr107 40890 42843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc107g00006 6 257 14-3-3 family AT2G42590 78.571 2.47e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc107g00006 K06630 - gmx:100807980 451.055