Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc107g00004 ATGGCTCCATTAGAGAAAAGAGAAGGGATAATTAAACTGTTTGGGATAACGATCACGTTGCATGCAGCAGAAAGAAAAGAAGATGAGAAAAGCAGCAATGGTGGAAGCGAAGAAGAAGATCAAGAAGAAGAGATGAAGAAACCAAACAAGATCATAGCATGCCCGAGATGCAAGAGCATGGAAACCAAGTTTTGTTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGCCTGCCACAGGTATTGGACCGCCGGAGGGGCCCTTCGCAACGTCCCAGTCGGCGCAGGCCGCCGAAAGGGTAAGCTGCCGCCGTCCCCGTCCCCGTCCCCTGCCGATGCCCGTCACGGTGCCACCATCTACGAATCATCAGCATCCACCGTTCAGAGGTTTGGATTAGATGATGAAGAGGGGTTGGTTTTGGAAGAGTGGGATGTCGCCACCGTGATTCACGGTGGTTTCCGGCAGATTTTTCATCAGTCCTCTAAACGGCGGAGAACGAGCTCTGAGGATGGTCAACCTTGTTAA 537 0.5047 MAPLEKREGIIKLFGITITLHAAERKEDEKSSNGGSEEEDQEEEMKKPNKIIACPRCKSMETKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKGKLPPSPSPSPADARHGATIYESSASTVQRFGLDDEEGLVLEEWDVATVIHGGFRQIFHQSSKRRRTSSEDGQPC 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc107g00004 178 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Stsc107g00004 178 Pfam Dof domain, zinc finger 50 105 IPR003851 GO:0003677|GO:0006355
Stsc107g00004 178 MobiDBLite consensus disorder prediction 98 119 - -
Stsc107g00004 178 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Stsc107g00004 178 MobiDBLite consensus disorder prediction 22 47 - -
Stsc107g00004 178 PANTHER CYCLIC DOF FACTOR 2 26 135 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc107g00004 Stsc-Chr107 35291 35949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc107g00004 11 178 C2C2-Dof Transcription Factor Family AT1G29160 49.727 2.04e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc107g00004 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc107g00004 - - aip:107634834 271.166