Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1073g00001 ATGCAAAACCAGATAGTTGTATGGTTTTTGTCCTTTCTATTCTCATCTATATTAAGAAACTCCTCTTCACTAGACAACATAACTCCTCTTCAATCCATCACTGATGGACAGACATTAATTTCCAGTGGAGGAACCTTTGAACTTGGCTTCTACAGCCCTGGAAATTCAAAGGGCAGATACTTAGGCATATGGTACCATAACATATCTCCTAAGGTAGTGGTTTGGGTGGCTAACAGAGAAAAACCCCTCAACAACACCTCAGGAGTTCTAGAAGTCACCGGTGAAGGACTACTACTTGTCCTACTTAATGGCAGTACCAACAGCAACCTTGTGTGGTCCTCCAACATGTCAAGAAAAGTGGAAGACAAATGGAATCCAATTGCACAGCTCTTGGAGTCAGGTAATCTTGTTGTCAAAGATGGACATAACAGTGACCACTTTCTATGGCAGAGCTTTGATTATCCTCGTGACACACTCGTGCCGGGAATGAAGCTGGGATGGGATCTTGTGACAGGTCTAGAGAGGACTCTAACATCTTCGAAGAGTATTGATGATCCCGGCGGTGGAGACTACACTTTAAGAATTGACCTCCATGGTTATCCGCAAGTATTTCTAATGAATGCAAACAGAATAACAATTAGAGTAGGGCCATGGAATGGGCTAATGTTTTCAGGAGCTACACTTTATTTGCGCTATACCCAGTATACATCTCAATTTGTTTTCAATGAAGAAGAGGTGTTTGTTAGGTTCGGACCAGAAAATACATCAAAGTATATTAGATGTGTAGTGTACCCTTGGGGAGGTGTGCAGGTTTTGCATTGGTCAATACAAACCAGAGGCTGGGAGACATTTCTTTCTTTACCAGAAGCCGAATGCGACAAGTATGCTCTATGTGGTACAAACTCTGTTTGCAGGACCACTCCCACTCCGGTCTGTGAATGTCTTGAAGGATTTGTGCCAAAATATCCAGGAAAATGGAAGGATTCTTATTGGTCTGATGGCTGTGTTAGGATCACTCCCTTAAGTTGCAGAAATGATGACTTCAAGAAGGTCACAGGGATAGTGCTGCCGGACACGACTGCTTCTTGGTATAACAGGACCATGAACCTGCTGGAATGCAAGGAATTCTGTCTGAAGAATTGTTCTTATAATAACCAGACCATTGGTTTTAGTCAGAGGAAGCTGGCAGGCATCATTGTTGGATCTATGTTGTTCATCATGAGCATAATATTTGCACTCAAATTATTTCGATGGAGAAGAAAACATGAGGAGCCAGATATATTTTGGTTGAAGCGACGTGATCACAAACGGGAAAAGGAAGACATGGACCTCCCAACATTTGATTTATCAACCATAGTTTATGCCACCAATCAATTTTCTAGCAGTAACGAATTGGGAAAAGGTGGATATGGATCAGTTTATAAGGGTGTACTGGCAGATGGAACCGAGATTGCGGTCAAGAGACTTTCCAAGAACTCAGACCAAGGACTGCAGGAGTTCAAAACTGAAGTACGGCTAATTGCAAAACTTCAGCATCGCAACCTTGTAAAGCTTCTTGGTTGTTGCATTCAGCAAGAAGAGAAACTTTTGATTTATGAGCTCATGCCCAACAGGAGTTTGGACTACTTTATTTTTGATGATGCTAGAGGAAAATTGTTATATTGGGCTAAGCGCTTTCACATTATTAGTGGCACAGCTCGAGGCCTAGTTTATCTGCATCAGGACTCCAGGCTAAGAGTCATTCATAGAGATCTAAAAACGAGTAATATTCTTCTTGATGAAGACCTGAATGCAAAAATATCAGACTTCGGCCTTGCTAGGACATTTGCATGCGATCAGACTGAAGACAAGACTAAAAGAGTGGTGGGAACTCATGGTTATATTTCTCCTGAGTATGCAGTGCGTGGCTCTTTTTCAATGAAATCAGATGTGTTCTCCTTTGGTGTAATCGTGCTTGAGGTAGTCACTGGGAGGAGGACTAGAGAGTTCTGTGTCCCAAACCAAAGTCTTAACCTTCTTGGATTTGCATGGGATCTCTGGAATGAGGAGAGGACTCTGGAGCTGGTGGATGAGTCGCTGCGCGATTCAGTGAATGAAGCTGAAGCATTGAGATGCATTCATATAGGGCTGTTATGTGTGCAAGAGAGACCAGAACATAGGCCAAACATGTCATCAGTAGTTCATATGTTGGATGACGATAAACCATTGCCTCGGCCAAGGTTGCCTGCATTTTATTCACACCAACAAGATTCTACACGGATTGATGGTGAAGATGGTGAGGAAGTTCATTCAGCAAATGAGGTTACCATATCATTGTTAGGGGCAAGGTAG 2331 0.4256 MQNQIVVWFLSFLFSSILRNSSSLDNITPLQSITDGQTLISSGGTFELGFYSPGNSKGRYLGIWYHNISPKVVVWVANREKPLNNTSGVLEVTGEGLLLVLLNGSTNSNLVWSSNMSRKVEDKWNPIAQLLESGNLVVKDGHNSDHFLWQSFDYPRDTLVPGMKLGWDLVTGLERTLTSSKSIDDPGGGDYTLRIDLHGYPQVFLMNANRITIRVGPWNGLMFSGATLYLRYTQYTSQFVFNEEEVFVRFGPENTSKYIRCVVYPWGGVQVLHWSIQTRGWETFLSLPEAECDKYALCGTNSVCRTTPTPVCECLEGFVPKYPGKWKDSYWSDGCVRITPLSCRNDDFKKVTGIVLPDTTASWYNRTMNLLECKEFCLKNCSYNNQTIGFSQRKLAGIIVGSMLFIMSIIFALKLFRWRRKHEEPDIFWLKRRDHKREKEDMDLPTFDLSTIVYATNQFSSSNELGKGGYGSVYKGVLADGTEIAVKRLSKNSDQGLQEFKTEVRLIAKLQHRNLVKLLGCCIQQEEKLLIYELMPNRSLDYFIFDDARGKLLYWAKRFHIISGTARGLVYLHQDSRLRVIHRDLKTSNILLDEDLNAKISDFGLARTFACDQTEDKTKRVVGTHGYISPEYAVRGSFSMKSDVFSFGVIVLEVVTGRRTREFCVPNQSLNLLGFAWDLWNEERTLELVDESLRDSVNEAEALRCIHIGLLCVQERPEHRPNMSSVVHMLDDDKPLPRPRLPAFYSHQQDSTRIDGEDGEEVHSANEVTISLLGAR 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1073g00001 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 535 737 - -
Stsc1073g00001 776 Pfam PAN-like domain 343 382 IPR003609 -
Stsc1073g00001 776 Gene3D - 20 152 IPR036426 -
Stsc1073g00001 776 SUPERFAMILY Protein kinase-like (PK-like) 442 746 IPR011009 -
Stsc1073g00001 776 Pfam D-mannose binding lectin 73 181 IPR001480 -
Stsc1073g00001 776 Gene3D Transferase(Phosphotransferase) domain 1 535 736 - -
Stsc1073g00001 776 ProSiteProfiles Bulb-type lectin domain profile. 24 151 IPR001480 -
Stsc1073g00001 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Stsc1073g00001 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 184 IPR036426 -
Stsc1073g00001 776 ProSiteProfiles Protein kinase domain profile. 459 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1073g00001 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 426 534 - -
Stsc1073g00001 776 PIRSF SRK 384 776 IPR024171 GO:0004674
Stsc1073g00001 776 PIRSF SRK 1 389 IPR024171 GO:0004674
Stsc1073g00001 776 CDD STKc_IRAK 465 731 - -
Stsc1073g00001 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 152 - -
Stsc1073g00001 776 ProSitePatterns Protein kinases ATP-binding region signature. 465 487 IPR017441 GO:0005524
Stsc1073g00001 776 Pfam Protein tyrosine and serine/threonine kinase 462 730 IPR001245 GO:0004672|GO:0006468
Stsc1073g00001 776 SMART serkin_6 459 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1073g00001 776 SMART blect_4 30 155 IPR001480 -
Stsc1073g00001 776 Pfam S-locus glycoprotein domain 214 321 IPR000858 GO:0048544
Stsc1073g00001 776 Gene3D Phosphorylase Kinase; domain 1 428 534 - -
Stsc1073g00001 776 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 717 - -
Stsc1073g00001 776 CDD B_lectin 31 155 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1073g00001 Stsc-Chr1073 1877 4952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1073g00001 434 772 Receptor kinase-like Gene Family AT4G23150 51.471 1.51e-116 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc1073g00001 PK_Tyr_Ser-Thr 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1073g00001 - - aip:107611884 1293.1