Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1070g00001 ATGGTGAGAGGTCTCATTCCATTGTTTTCAATGATTCTCGTTCAGTTGGCGTATACAGGGATGAGTATTACTTCAAAGCTTGCCATAGAAGGTGGCATGAACCCTCTAGTCCTTGTTGCTTATCGCCAAATCTTTGCCACCATTGCCATTGCTCCCTTCACTTATTGGCTCGAATGGAAAACAGCTCCCAAGATGACAAGGCGCGTTATGATCCAAATAGTACTTTCTTCCATAGCAGGAATAACAGGAAACCAGGTTCTGTTCTTCGTGGGTCTAAAATATTCAAGTGCCACAATTGCATGTGCACTCACCAATTTGCTCCCAGCTTTTACTTTTGTCCTGGCAGTCATCTTCGGACAAGAGAGTGTGGGAGTGAAGAGAAAAGCAGGGGTAGCAAAGGTGTTAGGAACAGTATTGTGTGTAGGTGGAGCACTGCTTCTATCATTCTACCATGGCAAAACAATTGGTTTAGGAGAATCAAGCATTCATTGGAGCTATGCTGATAAAATGGAAGGAAGAAGCAGCTCGGATGGGAATGGAAACTCGCTTCTGGGCCCTTTTCTTCTTGTGGTCAGTGCTCTTGTTTGGTCAATGTGGTTCGTGATTCAAGCAGACATGAGCAAGAATTTCCCAGCTCCATATACCAGCACAAACTACATGTGTTTCTTGGCCAGCATCCAGTGTGTTGTTCTTGCCTTGTCTTTTGATCATGCCCCTTCTTCTTGGTCTCTTCATGATCCTATGAGACTTGTCTCTTCTCTTTATGCGGGTGTGGTTTGCACTGGTCTAGCTTACTGTCTCATGTCATGGACCATTGAGAGGAAAGGTCCTTTATACGTATCTGTATTTAGCCCCTTGCAACTCGTTCTCACTGCTGTTGCTAGCTGGGCATTGCTGAGGGAGAAACTATACATTGGAACTTTGATAGGGTCGGTGCTGATAGTTGGAGGGCTATATTGTGTTCTGTGGGGAAAGAACAAAGAGATGAATGAGGTGATGATCACTGAAAAAGAGACAGTGAAGTACAACGAGACTCATCATCATGCAAAGAATAATAGTGATATGCAGTTTCCATCTTACAACTCCAACAATGGTAATCATCATCGTGTAATTGTGGATGTCGCTTAA 1128 0.4379 MVRGLIPLFSMILVQLAYTGMSITSKLAIEGGMNPLVLVAYRQIFATIAIAPFTYWLEWKTAPKMTRRVMIQIVLSSIAGITGNQVLFFVGLKYSSATIACALTNLLPAFTFVLAVIFGQESVGVKRKAGVAKVLGTVLCVGGALLLSFYHGKTIGLGESSIHWSYADKMEGRSSSDGNGNSLLGPFLLVVSALVWSMWFVIQADMSKNFPAPYTSTNYMCFLASIQCVVLALSFDHAPSSWSLHDPMRLVSSLYAGVVCTGLAYCLMSWTIERKGPLYVSVFSPLQLVLTAVASWALLREKLYIGTLIGSVLIVGGLYCVLWGKNKEMNEVMITEKETVKYNETHHHAKNNSDMQFPSYNSNNGNHHRVIVDVA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1070g00001 375 Pfam EamA-like transporter family 184 322 IPR000620 GO:0016020
Stsc1070g00001 375 Pfam EamA-like transporter family 7 148 IPR000620 GO:0016020
Stsc1070g00001 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 327 - -
Stsc1070g00001 375 PANTHER WAT1-RELATED PROTEIN 7 337 IPR030184 GO:0016020|GO:0022857
Stsc1070g00001 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 149 - -
Stsc1070g00001 375 Gene3D - 217 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1070g00001 Stsc-Chr1070 1483 4559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1070g00001 5 366 Nodulin-like Gene Family AT1G09380 56.868 6.79e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1070g00001 - - gmx:100801512 513.842