Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc106g00021 ATGAATGACTTGTTCTCCGGCTCCTTCTCCCGCTTCCGCAGCACCGATCAAGTCTCTCCGGACAACCGCAGCCATGTCATCGAGATGGGGGCGACCGACGGCAACGTCCACCTCGACAAGTTCTTCGAGGAAGTGGAGGTTGTAAAGGAGGAGTTAAAAGAGTTGGAGAAGCTCCATGAGAGCCTAAGAGTGTCCCATGAGAGGAGCAAGACCCTTCACAGCGCTAAGGCCGTGAAAGACCTTAGAGCCAGCATGGATGCTGACGTGTCAATAGCACTAAAAAAGGCCAAGCTTGTTAAGGTCCGACTCGAGGCATTAGACAGGTCCAACGCAGCAAGCCGAAGCTTGCCTGGTGCTGGGCCTGGTTNNNNNNNNNNTCGGACCAGGACATCCGTGGTGAGCGGATTGAGGAAGAAGTTGAAAGATTCCATGGACAGCTTCAACAACCTTAGACAACAAATATCCTCAGAGTACAGAGAAACCGTACAACGTAGATACTATACTGTCACAGGAGAAAATCCTGATGAGAAAACCGTTGATCTTCTCATCTCTACAGGTGAGAGTGAAACTTTTCTACAAAAAGCAATTGAGCAACAGGGGAGAGCCACAATCATGGATACAATCCAAGAGATTCAAGAGAGGCATGACACAGTTATGGAGATAGAGAGAAGCCTCAATGAGCTTCACCAAGTGTTCATGGACATGGCTGTTTTGGTCCAATCACAAGGGGAGCAAATAGATGACATAGAGAGCCACGTGGCAAGAGCCAATTCGTACGTCCGTGGTGGGGTCCAGCAGCTCCAGGTTGCAAGGAAGCACCAGAAGAATACCCGGAAATGGACCTTCATTGCCATCATCATATTGATCATCATCATATTGATTATAGTCCTTCCTATTGTTCTAAGAAATTGA 912 0.4781 MNDLFSGSFSRFRSTDQVSPDNRSHVIEMGATDGNVHLDKFFEEVEVVKEELKELEKLHESLRVSHERSKTLHSAKAVKDLRASMDADVSIALKKAKLVKVRLEALDRSNAASRSLPGAGPGXXXXRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDEKTVDLLISTGESETFLQKAIEQQGRATIMDTIQEIQERHDTVMEIERSLNELHQVFMDMAVLVQSQGEQIDDIESHVARANSYVRGGVQQLQVARKHQKNTRKWTFIAIIILIIIILIIVLPIVLRN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc106g00021 303 SMART tSNARE_6 203 270 IPR000727 -
Stsc106g00021 303 Pfam SNARE domain 244 296 IPR000727 -
Stsc106g00021 303 CDD SynN 60 195 IPR006011 GO:0016020
Stsc106g00021 303 SUPERFAMILY t-snare proteins 37 263 IPR010989 GO:0016020|GO:0016192
Stsc106g00021 303 PANTHER SYNTAXIN 50 292 IPR045242 -
Stsc106g00021 303 Gene3D - 35 168 - -
Stsc106g00021 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Stsc106g00021 303 Gene3D - 197 301 - -
Stsc106g00021 303 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Stsc106g00021 303 Coils Coil 38 65 - -
Stsc106g00021 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 35 165 - -
Stsc106g00021 303 FunFam Syntaxin 132 201 301 - -
Stsc106g00021 303 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc106g00021 303 SMART SynN_4 33 159 IPR006011 GO:0016020
Stsc106g00021 303 CDD SNARE_syntaxin1-like 207 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc106g00021 Stsc-Chr106 101794 103151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc106g00021 30 281 SNARE and Associated Proteins AT3G11820 73.016 1.21e-136 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc106g00021 K08486 - gmx:100793347 414.461