Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc106g00008 ATGGAGAGTGTGTGGAAGCCTAATGTTGAGATATCCCCAAATTGCCCTCGGTGTGGTTCCTCCAACACAAAGTTTTGCTACTACAACAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAGGGCTGTAGAAGGTACTGGACAAAAGGTGGGTCCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGGAAGAATAGAAGAGGTAATAAAACCCTAAGACAATCCCTTGAAGGCCTTCATTTCAAGAATTCATCATCATCATCACCATCACATGATCATGTCACAAATAATAACCCTAACCCTAATTCTACTATTATTGGCCATCATTCTAATAGATCCTCATCACCAGTGATAGCTGATGGACCAAACATTGATCTTGCCCTAGTTTATGCAAATTTCCTCAATCAAAAGCCTAATTCAGGAGATGGGGTGGCTGAGAATAACAACAATAATCAAGATCATCATCATCAATTATTGCAACCTGTTTTTGATGATCCTTCTCTAGAAGATGGTCCAAGTAGTACTAATTTCCCTCCTCATCAAGAATTTGGTCTTAATGGATGTATAAATATTCCTGAGCTACCCAATTTTGGTGAGGGAAATAACCATCATCAAATGTACTTAAAAGGGTTCAACTCTATGGAGATTCATCATCATCAAAGGGATAATAGTAATAATGATGGAACAATTGAGAATTGTAGTATCAACACTTTTGATTTGCCACCATTACCGGGTGATGAAGAAGCCTCACATCATCACCATCATCATTTGATGTGGTCAAATGATAATAATCCTGAGATGATCATGGTGAACCATGATGCATTTCATGATCAAATAGCAACACATCATCATCATCATCATCCACCACTTTTTGGGAATGAAGCTCATCATGATGCTGATTTGTTAATTGGTAATTGGAGCCCTTTTGATTTGCCATCATCAAGGGATGCTGCTGCTTCATTTTCTAGGCATTGA 975 0.3979 MESVWKPNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLRQSLEGLHFKNSSSSSPSHDHVTNNNPNPNSTIIGHHSNRSSSPVIADGPNIDLALVYANFLNQKPNSGDGVAENNNNNQDHHHQLLQPVFDDPSLEDGPSSTNFPPHQEFGLNGCINIPELPNFGEGNNHHQMYLKGFNSMEIHHHQRDNSNNDGTIENCSINTFDLPPLPGDEEASHHHHHHLMWSNDNNPEMIMVNHDAFHDQIATHHHHHHPPLFGNEAHHDADLLIGNWSPFDLPSSRDAAASFSRH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc106g00008 324 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Stsc106g00008 324 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Stsc106g00008 324 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Stsc106g00008 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 192 IPR045174 GO:0003700|GO:0006355
Stsc106g00008 324 MobiDBLite consensus disorder prediction 80 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc106g00008 Stsc-Chr106 54802 55776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc106g00008 4 311 C2C2-Dof Transcription Factor Family AT3G52440 37.342 2.93e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc106g00008 zf-Dof 5.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc106g00008 - - adu:110277481 584.334