Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc106g00007 ATGGATCATGAAATTGATGTTCCACCATTTTTTGTGTGCCCAATTTCATTGGAAATCATGAAGGATCCGGTGATTGTATCCACAGGAATCACCTATGATAGAGAGAGCATTGAGAAGTGGTTATTGAAGAACAAGACATGCCCGGTTACAAAGCAAGCCCTTGAGATTTTAGACCTAACTCCTAATCACACTCTTAGGAGATTGATTCAAGCATGGTGCACCTTGAATGCTTCTCATGGAGTTGAAAGAATTCCAACACCAAAGCCTCCGGTCAATAAAGAACAGGTATCAAAGCTCATCAAAGATGCTTCTTCCTCTTCTTCTTATAATGATGATCAAGATTCATTGCTTTCTCAATGCCTTATGAGACTTAAATCAATGGCGGCCGAGAGCGAATCGAACCGGAGATGCATTGAATCGGCCGGTGCTGTTGAGTTCTTAGCTTCAATAGTTGTGATGAATCATGGCTATGATTCAATTGAGGCTAGTTCCGATGGAGACGAATGTTTTGACACGAAATCAGGTGTTTCGGACGAAGCTTTGAACATACTCCACAATCTTCATTTATCAGAAAATGGTTTGAAAGTCCTATTAGGGTTCAAAGATGGAATCTTTATTGATTCCTTGACAAGGGTCTTGCAAAGAGGAATCTATGAATCAAGGGCTTATGCGGTTTTCTTATTGAAATCCATGTCCCAAATTGCAAACCCTAATCAGCTTGTGAATCTTAGAAGTGAATTGTTTGTGGAATTGGTTCAAGTTCTAAAGGATCAAATCTCACAAAAGGCTTCAAAGGCAACACTACAAACCCTAATTGAGCTTTGTCCATGGGGAAGAAACCGGATCAAAACGGTCGAATCCGGGGCGATCCATGTCCTAATTGAGCTTCTTCTTGATTGCAAAGAGAAGAAGCCATGTGAGATGATGATGGTGGTTTTGGATATTCTATGCCAGAGTGCTGATGGAAGAGCCGAGCTTCTCGGCCACGCAGCCGGTTTGGCCGTCGTTTCTAAGAAGATTCTAAGGGTTTCAACATTGGTGAATGATAGGGCTGTGAAGATCTTGCTCTCAATTGCAAGGTACTCAGCAACACAAAGTGTTGTTCAAGAAATGTTGCTAATTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAACAAGGCTAAGGAGAAAGCAAGGGAGATTCTCAAGCTTCATTCTAAGACATGGAGGAATTCTCCTTGTTTACCAAACAATTTTCTTTCTGCATACCCTCTAAATTAG 1275 0.411 MDHEIDVPPFFVCPISLEIMKDPVIVSTGITYDRESIEKWLLKNKTCPVTKQALEILDLTPNHTLRRLIQAWCTLNASHGVERIPTPKPPVNKEQVSKLIKDASSSSSYNDDQDSLLSQCLMRLKSMAAESESNRRCIESAGAVEFLASIVVMNHGYDSIEASSDGDECFDTKSGVSDEALNILHNLHLSENGLKVLLGFKDGIFIDSLTRVLQRGIYESRAYAVFLLKSMSQIANPNQLVNLRSELFVELVQVLKDQISQKASKATLQTLIELCPWGRNRIKTVESGAIHVLIELLLDCKEKKPCEMMMVVLDILCQSADGRAELLGHAAGLAVVSKKILRVSTLVNDRAVKILLSIARYSATQSVVQEMLLIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKTWRNSPCLPNNFLSAYPLN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc106g00007 424 Gene3D - 83 402 IPR011989 -
Stsc106g00007 424 ProSiteProfiles U-box domain profile. 6 79 IPR003613 GO:0004842|GO:0016567
Stsc106g00007 424 SUPERFAMILY RING/U-box 4 78 - -
Stsc106g00007 424 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Stsc106g00007 424 Pfam U-box domain 7 74 IPR003613 GO:0004842|GO:0016567
Stsc106g00007 424 CDD RING-Ubox_PUB 8 59 IPR045210 -
Stsc106g00007 424 SUPERFAMILY ARM repeat 110 407 IPR016024 -
Stsc106g00007 424 SMART Ubox_2 10 72 IPR003613 GO:0004842|GO:0016567
Stsc106g00007 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Stsc106g00007 424 PANTHER WDSAM1 PROTEIN 3 414 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc106g00007 Stsc-Chr106 48144 49679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc106g00007 1 422 U-box Gene Family AT3G52450 55.530 6.19e-169 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc106g00007 - - gmx:100809123 591.267