Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc106g00006 ATGGATAATGATGAAATTGATGTTCCTGAATATTTCATATGTCCAATTTCACTTCAAATCATGAAGGATCCTGTGACTGCCATTACAGGAATCACATATGACAGAGAAAGCATTGAGCAATGGCTTCTCAAGAACAAGAACACAACATGTCCAGTTACCAAAATGCCCCTACCTTCAGATTCTGATCTTACACCAAACCACACCCTTCGCCGTTTGATCCAAGCATGGTGCACTCAAAATTCTTCATTGGGTATTGATAGAATCCCAACACCCAAGCTCCCACTTAACAAAGTTCAAGTCTTGAAGCTCCTTAAGGATCTTAAGGACCCAATATTGAAGATCAAGAGCTTAAGGCAGTTGGAGATTCTTGCAGCTGAGAATGAGAGGAACAAGAAGTGTTTGATTGATTCTGGTGTTCCAAAAGCCGTGATCATGTTCTTATTGGATTGTTATTACAAAAAGGGTGTTGAAGAAGGTGTTGAAGAAGCTCTTAGTTTGTTACAGTTTGTTAAGGTTTCTTCCGAGGAAGTTAAGGTTCTTATGTCCGAGAATTCTTTTGATTCCGTCCTGGATTCTCTAACATGGCTTCTCGGGTGCGATTTTTCGGGGAATTCGACGATGGTGAAATCGCACGCTGTTCTAGTGATCAAGAACTTGATCCAAAGGGGCGATTCAAGCGTCATTCAGAGGCTTAAATTTGAGTTCTTTGAAAAAATTGTGACGGTTTTGAGAAACCGCGTTGTAACGCAACGGGGTATTAGTGGCGCTTTAAAAGTGTTGCTATTTGCTTGTTCGTACGGAAGAAACAGGATCATGATGGTGGAATGTGGTGCAGTTTTTGAGTTAATTGAGATTGAAATGGGAACACCGGAGAAGATAATCAATGAATTAACAATGTCTATTCTTTTTCATCTATGTTCATGTGCTAGTGGAAGAGCTCAATTATTGTGTCACAAAGGTTCAATGGCGGTTTTGACGGAAAGAATGTTGAAGGTTTCTGCGGCGGTTGATGATAGAGTAATAATTATTCTATCATTGATATCCAAATTTTCTGCTACAAATTCTGTGCTTCAAGAGATGTTGAAGGTTGGAACCGTTGCTAAGCTTTGTTTGGTTCTTCAAAGTGATCATGCAAAGTACATCAAAGAGAAAGCCATGGAAATTATTAAGAATCATTCTGAGGTTTGGAGGAACTCTCCTTGTTTTCCTGAAAGGTCTTCTTTTTATGGAAAGTTTGTATAA 1242 0.3921 MDNDEIDVPEYFICPISLQIMKDPVTAITGITYDRESIEQWLLKNKNTTCPVTKMPLPSDSDLTPNHTLRRLIQAWCTQNSSLGIDRIPTPKLPLNKVQVLKLLKDLKDPILKIKSLRQLEILAAENERNKKCLIDSGVPKAVIMFLLDCYYKKGVEEGVEEALSLLQFVKVSSEEVKVLMSENSFDSVLDSLTWLLGCDFSGNSTMVKSHAVLVIKNLIQRGDSSVIQRLKFEFFEKIVTVLRNRVVTQRGISGALKVLLFACSYGRNRIMMVECGAVFELIEIEMGTPEKIINELTMSILFHLCSCASGRAQLLCHKGSMAVLTERMLKVSAAVDDRVIIILSLISKFSATNSVLQEMLKVGTVAKLCLVLQSDHAKYIKEKAMEIIKNHSEVWRNSPCFPERSSFYGKFV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc106g00006 413 FunFam RING-type E3 ubiquitin transferase 8 82 - -
Stsc106g00006 413 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Stsc106g00006 413 SUPERFAMILY ARM repeat 100 392 IPR016024 -
Stsc106g00006 413 Gene3D - 98 399 IPR011989 -
Stsc106g00006 413 PANTHER WDSAM1 PROTEIN 5 403 IPR045185 GO:0061630
Stsc106g00006 413 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Stsc106g00006 413 CDD RING-Ubox_WDSUB1-like 9 66 - -
Stsc106g00006 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Stsc106g00006 413 Pfam U-box domain 8 81 IPR003613 GO:0004842|GO:0016567
Stsc106g00006 413 SUPERFAMILY RING/U-box 4 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc106g00006 Stsc-Chr106 37192 38433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc106g00006 2 402 U-box Gene Family AT3G11840 41.124 1.45e-112 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc106g00006 - - lja:Lj0g3v0014579.1 524.242