Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc106g00005 ATGGCGACATATTTTCATGGTAATTCGGAAATTCAAGGTGGTGGTGTTGACGGCGGCCTTCAAACTCTTGTCCTAATGAACCCCGGCTACATACAATACTCCGACACGCCGCCGCCGCCACACGGCGGAAACCTTATGCTTCTCAACTCTCTCACCGCCGCCGGAAACGCCTCCCTCAACCCTCACGCGCCGCTTTCTCAACAATTCCTCGGTGTGCCTCTCGCGGCAGAGCAGTCCATGCAGGGCCACCATGACGTCTCGGTTGCCCTGCATGGCTACGCGCCGCGCGGGCACTACAACCTTTGGAACACAATTGATGCTTCTACTGCCGCGCGTGATGCTACACGCGCCACACAAGGACTCTCTTTAAGCCTCCCGGCTATGTCGGGCGAAGACGTTAGAGTCTCCGGTGGGTCCCCGTCTTCCGTTTCCGGGGTTACCAACGGTGTTTCGGGGATTCAGAGTGTGCTATTGAATTCGAAGTATTTGAGAGCCACACAAGAGCTTCTAGAAGAAGTTGTGAATGTTAATAATAATATTAATAATAATGTTAATAATAATAATAATAATATGAAGAAGAAGAGTTTTGAGAAGGGTAAGGTTGGTGTTGGAGAATCTTCAAATGGTGGTAATAGTGGTGGAGATGGTTCAGTTGGTGAAGGAAGTGAGAAGCGTTGTGCTGAGTTATCAGCCACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGTTAATCACCATGCTTGATGAGGTGGAACAAAGGTACAGGCAATACCATAATCAAATGCAGATAGTGATATCCTCATTTGAGCAAGCTGCTGGAATTGGATCAGCAAGAACATACACTTCCCTTGCATTGCAAACAATCTCAAAGCAATTTAGGTGCTTGAAGGATGCCATAACTGCTCAAATTAAAGCTGCAAATAAGAGCTTAGGTGAAGAGGACTACTTTGGAGGAGCCAAAATTGAAGGGTCAAGGCTTAAATATGTTGATCATCATCTAAGGCAACAGAGAGCTATACAACAACTGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGTCTCCCGGAGAGATCGGTTTCGGTTTTGCGCGCTTGGCTGTTCGAACACTTTCTTCATCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGGCTTACAAGGAGCCAGGTGTCAAATTGGTTCATCAATGCAAGAGTTAGGCTTTGGAAGCCAATGGTTGAGGAAATGTACTTAGAGGAAATGAAGGATCATGAACTCAATAATAGTAACAACAATAATAATGCCTCTGAAGACAACAAATCAAGCAAGAGCAATGGAGATCCAAACAATGCTAAAAATTCACCGCCGCGAGACAACAACAACTCTGAATCCGAAACCAAGAAGATTTTCAATTTGAAACAAGACAACAGCGTCTCAATTTCACCGACACCAATCGGCGAAAAGGCGAATAGTTCTTCTGGATTCAGCTTCATGGGGTCATCATCAGAATTGTTAGATGGAATCACACAACAAGGTAGTAGTCCTAAGAAGCCAAGGAACAACAACAATGAAATTGTTCATCATCATAGCCAAAATAGTAACAATGATATTAGAGATAATGAATACTCATTCATCAACAATGTTGGGAGCCAAACAAACTTCATTGGTGGATTTGGACAATACCCTATTGATGAAATTGGAAGATTTGATGCTTCTGCTGCTGAAAATTTTACAAGATTCTCATCAGGTAATAATAATAATAATAATGGTGTATCACTGACTCTTGGTCTTCCACATGGTGACACATTCCAGAACATTCAACTAGGAAGAAGATTGGAACATATGAGTAGTGAACAACAACATTCAAATGAGTTTGCTGCAGTTAGCAACAATCAAAATCCTCATCACTCTTCAGCTGCATTTCAGAGTATGCAGAATTCAAAGAGGTTTGCTGCACAATTGTTGCCAGATTATGTGGCCTAA 1983 0.4327 MATYFHGNSEIQGGGVDGGLQTLVLMNPGYIQYSDTPPPPHGGNLMLLNSLTAAGNASLNPHAPLSQQFLGVPLAAEQSMQGHHDVSVALHGYAPRGHYNLWNTIDASTAARDATRATQGLSLSLPAMSGEDVRVSGGSPSSVSGVTNGVSGIQSVLLNSKYLRATQELLEEVVNVNNNINNNVNNNNNNMKKKSFEKGKVGVGESSNGGNSGGDGSVGEGSEKRCAELSATERQEIQMKKAKLITMLDEVEQRYRQYHNQMQIVISSFEQAAGIGSARTYTSLALQTISKQFRCLKDAITAQIKAANKSLGEEDYFGGAKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHELNNSNNNNNASEDNKSSKSNGDPNNAKNSPPRDNNNSESETKKIFNLKQDNSVSISPTPIGEKANSSSGFSFMGSSSELLDGITQQGSSPKKPRNNNNEIVHHHSQNSNNDIRDNEYSFINNVGSQTNFIGGFGQYPIDEIGRFDASAAENFTRFSSGNNNNNNGVSLTLGLPHGDTFQNIQLGRRLEHMSSEQQHSNEFAAVSNNQNPHHSSAAFQSMQNSKRFAAQLLPDYVA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc106g00005 660 Pfam Associated with HOX 156 301 IPR006563 -
Stsc106g00005 660 ProSiteProfiles 'Homeobox' domain profile. 348 411 IPR001356 GO:0003677
Stsc106g00005 660 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 438 - -
Stsc106g00005 660 MobiDBLite consensus disorder prediction 200 228 - -
Stsc106g00005 660 CDD homeodomain 351 412 IPR001356 GO:0003677
Stsc106g00005 660 Coils Coil 234 261 - -
Stsc106g00005 660 Coils Coil 163 183 - -
Stsc106g00005 660 SMART prehox3 151 302 IPR006563 -
Stsc106g00005 660 MobiDBLite consensus disorder prediction 427 460 - -
Stsc106g00005 660 MobiDBLite consensus disorder prediction 425 537 - -
Stsc106g00005 660 Pfam Homeobox KN domain 368 407 IPR008422 GO:0003677|GO:0006355
Stsc106g00005 660 FunFam BEL1-like homeodomain protein 9 354 416 - -
Stsc106g00005 660 SUPERFAMILY Homeodomain-like 352 418 IPR009057 -
Stsc106g00005 660 SMART HOX_1 351 415 IPR001356 GO:0003677
Stsc106g00005 660 MobiDBLite consensus disorder prediction 471 537 - -
Stsc106g00005 660 Gene3D - 347 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc106g00005 Stsc-Chr106 28347 32238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc106g00005 1 660 Homeobox Transcription Factor Family AT2G35940 44.504 9.09e-163 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc106g00005 POX 1.4e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc106g00005 - - gmx:100791773 727.628