Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc105g00002 ATGTCGTCGACGAATTCACCATGCGCGGCGTGCAAGTTCCTCCGCCGGAAGTGCACACAAGAGTGCATTTTCGCGCCTTACTTCCCGCCGGACAACCCGCAGCGCTTCGCATACGTCCACCGCGTCTTCGGCGCCAGCAACATCGGCAAGATCCTCAACGAGCTAGCCGCCTCGCAACGGGAGGACGCGGTGAAGTCCCTTGCGTTCGAGGCGGAGGCGCGCCTCCGCGACCCGGTCTACGGCTGCGTGGGCGAGATCGCCGTGCTGCAGCAGCGCCTCCGCCAGGCACATACGGAGCTCTTCAACGCCAAGAACGAACTCAGCGCCTTCGTCAACCCACAAGCCTTGCAAGGTGCATTGATGTCACCTCACGGAATTCGAGGAGTCCCCCTTTACCCTCAGGCAAAGCCTTTGTCTCCTACTCTCTTTGCAGCTCCCTACGGCCAGAACGCTATGCCAGCTGTCCAGCATTCTGTACCGTTGGGTGCTGCTGGTGACCTGGACCCGGAGCAACAAGAGTTGTTGGAGGCCCAACAACTCGCTGCTGCTGCCGCAATCCGGGAACAGCAGCACCATGCCATGATGATGAGGAATTTTGAACTGCAACAACAACAGGAGTATCTAAGATACAATGCTGCTGCTATTGGAATTGAACCTGCTGCTGTGGCTGCAAGTCCGGCTTCAATTGTGACGGCTGAAGGTGGCGGTGGCAGCGGCGGTGGAAGTGGAGTGTTTGGGCAGATGGGTGGTCAAGCAGGTGAGATGGCACCTTGTTTGGCTTTGGGGACATTTGAGAGTTCTGGAACTTATAATCAGCATCAGCATCATCATCAGTTGCAACAACAACCACAACAACATGGAGTTGGGGAAAATTATGTTGGTCTTGTAACTCATCATCATCATCATAATCATTACCCTGTTGAGGCGCAGTTTCTGCTCTCATCAGAGCAGCAAGCACAGTTGTCCCAACAACAACAACCGTCAGAGATTGTGGCTTTATTAGCTTATTATGAAAGGTTGATGAGAGAGCGTGAACTTGAGGATGCTGCTTATCGGTCATGGATGAATCGGAAAACTCATCACCTCAGGGCTGATCTTCGATGTGAGTACTTCGTATGGCTTGATGAGATTGGAGATGATGGAAAAAGTATGGGTGTCTAG 1161 0.5357 MSSTNSPCAACKFLRRKCTQECIFAPYFPPDNPQRFAYVHRVFGASNIGKILNELAASQREDAVKSLAFEAEARLRDPVYGCVGEIAVLQQRLRQAHTELFNAKNELSAFVNPQALQGALMSPHGIRGVPLYPQAKPLSPTLFAAPYGQNAMPAVQHSVPLGAAGDLDPEQQELLEAQQLAAAAAIREQQHHAMMMRNFELQQQQEYLRYNAAAIGIEPAAVAASPASIVTAEGGGGSGGGSGVFGQMGGQAGEMAPCLALGTFESSGTYNQHQHHHQLQQQPQQHGVGENYVGLVTHHHHHNHYPVEAQFLLSSEQQAQLSQQQQPSEIVALLAYYERLMRERELEDAAYRSWMNRKTHHLRADLRCEYFVWLDEIGDDGKSMGV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc105g00002 386 Coils Coil 86 106 - -
Stsc105g00002 386 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Stsc105g00002 386 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 269 - -
Stsc105g00002 386 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc105g00002 Stsc-Chr105 7532 11999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc105g00002 1 303 AS2 family AT5G66870 41.270 5.64e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc105g00002 LOB 7.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc105g00002 - - aip:110262357 328.176