Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1053g00003 ATGATTCCGAAGATGGTAAAGATATTGAAACAAATGGACCCCAAGGACCTTTTTCGTGTTGACATGATTGATAAGCTCTTGGAAAAGCTTTACAAGTGTGGTGTGATATCAACCAGGCAGAGCATCACATTATGTGAACGTATAACTGTATCATCCTTCTGCAGGCGCAGGCTTGCAACTGTTTTGGTGCCACTAAAATTTGCAGAACACCTGAAAGAAGCTGTGACGTACATTGAGCAGGGGCATATACGGGTTGGTCCAGAGACCCTTACCGATCCAGCTTTCCATGTGACTAGAAATATGGAAGACGTTACATGGTTGGATTTGTCCAAGATAAAGAGAAAGGTTCTGCAGACTGCTGTATAA 366 0.429 MIPKMVKILKQMDPKDLFRVDMIDKLLEKLYKCGVISTRQSITLCERITVSSFCRRRLATVLVPLKFAEHLKEAVTYIEQGHIRVGPETLTDPAFHVTRNMEDVTWLDLSKIKRKVLQTAV 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1053g00003 121 PANTHER 30S 40S RIBOSOMAL PROTEIN 6 103 IPR022801 GO:0003735|GO:0015935|GO:0019843
Stsc1053g00003 121 SUPERFAMILY Alpha-L RNA-binding motif 48 113 - -
Stsc1053g00003 121 CDD S4 56 100 - -
Stsc1053g00003 121 SMART s4_6 56 118 IPR002942 GO:0003723
Stsc1053g00003 121 Pfam S4 domain 56 102 IPR002942 GO:0003723
Stsc1053g00003 121 ProSiteProfiles S4 RNA-binding domain profile. 56 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1053g00003 Stsc-Chr1053 10749 11778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1053g00003 12 110 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 29.000 1.59e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1053g00003 K14560 - gmx:100782389 199.134