Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1047g00004 ATGCCTGAACAAATCCCCTTCGGTGTTGCTACTTCCCTCATAAACACAATTGCTTCATCTGCCTTTCGCGAAATCGGGAGGATCTATGGAGTCATGGATGACCTGGAGAAGTTGAAAGACACTCTGGAATCCATCAAAGTGTTGCTTTCTGATGCTGAGCTCAAACAAGGCCAGGATGCTACTGTTGCTCATTGGGTTAAAAGGTTCAAACAAGTACTTTATGATGCTGATGACTTGCTTGATGACGTCTTCATCAAAGACTTGCGCCGCAAGGCAAGTGTTGGCAATGGGAAAACGAGAAAGGTGCGTGACTTCCTTTCCATATCTGATAATTCAATTGTTTTTCGTGCTAAGTTAGCTCGAAAGATCGAGAATATTCGAAAGAACTTTAATGAGATCGCTGAAGATATGTCCAAGTTGAATCTGAGTCGGAGTGTGGTAATTCTTAAGCAAGATGAATGTGCTTGGAGAGAAACAAGTTCTTCCATTTTGCAATCAGAGATAATTGGAAGGGAAGAGAACAAGAGCGAAATTGTTAACTTGCTGAAGAAAACTCATCCAAACCAAAATGTTTCTTTAATTGTTGTTGTTGGTATTGGGGGTTTAGGCAAGACAGCCCTTGCTCAGCTAGTGTACAATGCTGCTCAAGACCAGAATCTTTTTCACAAGTATATGTGGGTGTGCGTCTCCGAAGATTTCGAGGTGAAAACTATTTTGAAGAAGATGCTACAGTCTTTGAAGAAGGATGCAGATGGTGACTCATTAGAGGCCCTACAACAGAAGTTGCGAGAAGAATTAAATGGGCAAAAGTATATGCTTGTACTTGACGACGTGTGGAATGAAGAGCATTTAAAGTGGAATGATTTAAGAACTCATTTGATGTGCGGAGGTCAAGGCAGTAAGCTATTAGTAACTACTCGAAGTAAATTGGTGTCTCAAGCAATGGGTGTAGATGCGCCGTATGTTTTGAAAGGTTTGACAGATAAGCAATCATGGACATTGCTAAAGAACCTGATATTTGGTGATGATAGCAGCAAAATGAACTCCAAATTCCAAACAATTGGAGAGAAAATTGCAAACAAGTGTGAAGGAGTGCCATTGGCAATCAGAACAATAGGAGGCTTGTTACGAACAAGGGTTGAAGATGCTGATGAATGGTCAAGTCTTTTGAATGGTGATATTTGGAGGCTATGTAAAGAAGAGCAGAGCATCATGCCGGATGAGTGTATTCAGTTGTGGATGGCTCAAGGTTACCTTGCGTGTTCAACTGAAATGCAATCTATGGAAGATGTGGGTAATCAATATGTCAACATTTTGTTAATGAGGTCACTTTTCCAGGATGCATCAATGGACGAAAATGGTCATATTCGATACTTCAAAATGCATGATTTGATGCATGATCTTGCAATGCAAGTAGCTGGGAATGATTGTTACTTAGATACTGAGGGGGAAAAATGGTTGGAAAACCCATTCATGTGGCATTTGAAACTAGAACCTGTTCTTCGTTGGATGCATTTGAAGCTTGCAAATTACGGACAATAA 1542 0.4053 MPEQIPFGVATSLINTIASSAFREIGRIYGVMDDLEKLKDTLESIKVLLSDAELKQGQDATVAHWVKRFKQVLYDADDLLDDVFIKDLRRKASVGNGKTRKVRDFLSISDNSIVFRAKLARKIENIRKNFNEIAEDMSKLNLSRSVVILKQDECAWRETSSSILQSEIIGREENKSEIVNLLKKTHPNQNVSLIVVVGIGGLGKTALAQLVYNAAQDQNLFHKYMWVCVSEDFEVKTILKKMLQSLKKDADGDSLEALQQKLREELNGQKYMLVLDDVWNEEHLKWNDLRTHLMCGGQGSKLLVTTRSKLVSQAMGVDAPYVLKGLTDKQSWTLLKNLIFGDDSSKMNSKFQTIGEKIANKCEGVPLAIRTIGGLLRTRVEDADEWSSLLNGDIWRLCKEEQSIMPDECIQLWMAQGYLACSTEMQSMEDVGNQYVNILLMRSLFQDASMDENGHIRYFKMHDLMHDLAMQVAGNDCYLDTEGEKWLENPFMWHLKLEPVLRWMHLKLANYGQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1047g00004 513 PANTHER DISEASE RESISTANCE PROTEIN RP 35 483 IPR044974 GO:0006952
Stsc1047g00004 513 FunFam Probable disease resistance protein At1g61300 150 320 - -
Stsc1047g00004 513 Gene3D - 156 319 IPR027417 -
Stsc1047g00004 513 Coils Coil 35 55 - -
Stsc1047g00004 513 Gene3D - 402 472 IPR036388 -
Stsc1047g00004 513 Pfam NB-ARC domain 172 390 IPR002182 GO:0043531
Stsc1047g00004 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 403 IPR027417 -
Stsc1047g00004 513 Coils Coil 116 136 - -
Stsc1047g00004 513 Pfam Rx N-terminal domain 11 99 IPR041118 -
Stsc1047g00004 513 Gene3D - 325 401 IPR042197 -
Stsc1047g00004 513 PRINTS Disease resistance protein signature 193 208 - -
Stsc1047g00004 513 PRINTS Disease resistance protein signature 265 279 - -
Stsc1047g00004 513 PRINTS Disease resistance protein signature 362 376 - -
Stsc1047g00004 513 Gene3D - 10 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1047g00004 Stsc-Chr1047 16218 17852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1047g00004 198 373 WRKY Transcription Factor Family AT5G45050 26.923 3.39e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1047g00004 - - adu:110272418 761.525