Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc104197g00001 ATGCTTCCCCTTAGAAGACCAGACCTCTTCAAAGGTGGACTTCTGAAGCCATGTAGAGGCATATTGCTTTTTGGACCTCCTGGAACTGGAAAGACAATGCTGGCAAAGGCAATTGCGAATGAGGCCGGAGCGAGTTTCATCAATGTCTCAATGTCCACCATCACTTCAAAGTGGTTTGGAGAAGATGAAAAGAATGTTAGAGCTTTGTTCACACTTGCAGCAAAGGTTGCCCCTACTATAATCTTTGTTGATGAAGTTGA 260 0.4423 MLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEV 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc104197g00001 86 Pfam ATPase family associated with various cellular activities (AAA) 21 86 IPR003959 GO:0005524|GO:0016887
Stsc104197g00001 86 Gene3D - 2 86 IPR027417 -
Stsc104197g00001 86 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 85 IPR027417 -
Stsc104197g00001 86 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc104197g00001 Stsc-Chr104197 1 310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc104197g00001 3 86 Calmodulin-binding Proteins AT3G56690 48.810 2.26e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc104197g00001 - - gmx:100817952 173.326