Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc103g00009 ATGACAGGTTCTGGTTCTCCTTGTGGTGCTTGCAAGTTCTTGAGGAGAAAATGTGTGAGAGGATGTGTTTTTGCACCTTACTTCTGCCATGAACAAGGAGCAACTCATTTTGCAGCCATTCACAAAGTGTTTGGAGCAAGCAATGTCTCAAAGCTCCTTGCCCATCTTCCGGTGAGTGATCGGTGTGAAGCCGCCGTCACGATCTCGTATGAAGCTCAGGCAAGGCTTCAAGACCCCATCTATGGCTGTGTCTCTCATATCTTTGCCCTTCAACAACAGGTGGTGAATTTACAAGCACAGCTAGCATATCTGAAGGAACAAGCAGCACAACAAAGTTGTGTCAATGGTGGAAACCCTAATCATGAGAGATACTTTGATAAACCTAATAATACAAATACCAGCAACAATAATTTCATTACTCAACAAGATCTTCAAAGTTGGTTGTTCCAGATGGCAAATTCTTCATCTTCAAACTTGGGTGGCCTAGAATCTCTTCATCCAAATTTGTTCAACAATAATGAATCCTCTTCAGCAGGTCAATATTCTTCTTATGATGGTAGTGATGGAAACAACAACAACAATGTTAATCCCATGATGATGATGGATCTAAAGCCTATTAATAATAATGGGAGTTACTATGAAAATTCAAACTCATTCTCTAGCTTTGAAGAGAGTTCTTCAAACTCCATGTCCTATGACATGGAAACAAATAATAATGGTGGGGCAAAATGGTCTTTTCATGAAGTAGTTGATGATCTTCATTCAGTGGCCTTTGGTTACAGCAGATGA 789 0.4018 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQQSCVNGGNPNHERYFDKPNNTNTSNNNFITQQDLQSWLFQMANSSSSNLGGLESLHPNLFNNNESSSAGQYSSYDGSDGNNNNNVNPMMMMDLKPINNNGSYYENSNSFSSFEESSSNSMSYDMETNNNGGAKWSFHEVVDDLHSVAFGYSR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc103g00009 262 Coils Coil 87 107 - -
Stsc103g00009 262 MobiDBLite consensus disorder prediction 170 198 - -
Stsc103g00009 262 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Stsc103g00009 262 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 204 - -
Stsc103g00009 262 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc103g00009 Stsc-Chr103 65807 67088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc103g00009 7 184 AS2 family AT3G58190 59.016 5.48e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc103g00009 LOB 6.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc103g00009 K13945 - gmx:100805623 271.166