Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc102g00019 ATGGCCAGCACCGCTGCGACACCGCAGCAGCAACTTCTCAACCTAGAATCCCTGCCTCGGATAGACACTACAACTCTCTCACAATCGGAGCTCCATGCCCTCTCTCTCTCCTCCCTCTCCGCCTTCGATCTCCACTCCACCTATGGCCACCTCGTCACTCCCAAAATCGATCCCTCTCTCTTCAACGAGAGCGCCGGATCTCGCCGCCAGACATACTCCCGTCCTCACCGCTCCGAGTCTTCTCCCACCGGCCGTCGCCGCCGTGTCGCCGGCCTCCTCCCCGCCGCGAAGCTTTCTTCTCTCCCTTCCGATGACCTTGGAAATGCCGAGAACCGTGTGATCATCCATTATCTGAAACAGTTTATCAGGGAAGATCCTAAATTCGACCAAGTCGTGTTCGCTCCACCTTCTTCCGCTTCCTCGCTGGCTACCTATCACGGAGGCGGTGCCGGAGAGGGGAGAGGGGAGCTTGCAATGGTGAAATTCGGGGAGAGGAAGAGGAAGAGAGGGCGGAAGCCGAAGGTGAAGGTGAACTTGGGGGAATCCTACAGCGGAATGGAGATTGTGAACAAGAACGGAGTGGTGATCGATCTGATGGAGCTAGCGAAGGCGGTGGATCCTTTTGCGGAGGAGCTGAGGAGGCGAACGCAGGGTCTGCAGGGCGAGGAGGAGTTGTTAGGGTTTCTGAGGGATTTAGAGGGACAATGGGGAAGCAGGAGGAGGAAGAGGAGGATTGTAGACGCTGCCAATTTTGGTGACGCGTTGCCGCTTGGTTGGAAGCTTATTCTCGGGTTGAAGAGAAAGGATGGTCACGCTTGGATCTATTGCCGCAGATACATAAGCCCTAGTGGACAGCAATTTGTGTCTTGTAGAGAAGTTGCTTCATATTTGCAGTCTCTTATTGGCCATAGTGATGCACCATTGCAAATCAGTTATAGGACTGAGAATATGCCACAGGAACAAAGAGCAACCACTGAACAGTCTGCAGGTGTTTCCCACGAGGATCGACATGATTGGCAGATTGTTGTAGCTAACTCAGATGTGCCTAGTTTTTCTGTTTCTAATGAACGTGGGATGGAATTGGCCTTGTTGGGTTTGGAAAATCTTGCGGATGTGGAAATACATGACCTATTTGAATGTCACAAATGCGATGTGACCTTTGACGACAAGGATTCATACTTGCAGCATTTATTGTCATTTCACCAGAGAACAACAAGGCGATATCGGATTGGACCTTCTGTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGTCATAAGGTGTTCACAGAAAGGCGTCGCTACANNNNNNNNNNTAATGGGAGGCAGGCTGAAGATTCGTCAGGTCTGGAAAATGTTGAACGGACAGACAAGTCTTCTTTGAGGGAGGACATGCCTTCAAGAAGCTCCAGGATGGATGCCCTTATTGAAATTGCTCAAAGCTCTATCATGGAGGATTGTGACATGGAGCCTGCCTCGGAAGTTGCTGCTGGCAGCTTGGATCAAGATATGAACCTTGTGTCTGAACAGCAAATGGAAGATAGCTTAAATGGCACAAATGAAGTTCAAGATTTAGATCAGCAGGGTAGTCCACAGTTACACATGGATGTGGAAGAAGAAACTGATGATGATAGCCAAGTTATTGATGCAAAGATGGTTACTTGTCTCGATCACACGGGTTTGTTACGTATAAATGAACAAAATGGTATTCCAACTATTGAGGGGTTTGATAATTCTGGGATTGATGTGGGAGGAGCTTCTCAAGGCCCTTTGCTTCATATATCTTGCAAGGACAAAATATCAGAGTCTGGAGAGAATGAAAATTTTTGTTGCTCTAATACCAAAGAAAAGTCGAAGTTTAAGGAAGACAACAGTAATAAGAATGAATTGGGTATTGGTTTAGATGGTTGCAAAGATGTACCTGTTAGGACAGATGTTCAAGAGATCCTAATGCCAGATTCTGACAAAAATGTGATCGACTCTAGGGTTTCTAAATCACCTGTATCCCAAATGCAATCTTTGGATTGTTCTCCTGCTTTCAGCTCTGATAAGGTAGGAAAACAATCTTGTACTGAAGATCATGAGCATAATAATGTGAAGAGGTTCCAGGAAATGGATGATTCCCTTTCACTGCCTGACGTGCAAACTGATACGGTAAACAAAACAGTGATGGAAGGAACATATCCCACTCCAGTTCAGGTTGAATCACAAGAAGTTATGCAGCTTACAAGTGCGTGTGTTTGGTGTGGAATAGAGTTCAACCATGATGCTGTTAATTCTGAAATACAACCTGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCGAAAATCTCTGGTCAAATTAATGTGTTGGACAGTTGA 2379 0.4653 MASTAATPQQQLLNLESLPRIDTTTLSQSELHALSLSSLSAFDLHSTYGHLVTPKIDPSLFNESAGSRRQTYSRPHRSESSPTGRRRRVAGLLPAAKLSSLPSDDLGNAENRVIIHYLKQFIREDPKFDQVVFAPPSSASSLATYHGGGAGEGRGELAMVKFGERKRKRGRKPKVKVNLGESYSGMEIVNKNGVVIDLMELAKAVDPFAEELRRRTQGLQGEEELLGFLRDLEGQWGSRRRKRRIVDAANFGDALPLGWKLILGLKRKDGHAWIYCRRYISPSGQQFVSCREVASYLQSLIGHSDAPLQISYRTENMPQEQRATTEQSAGVSHEDRHDWQIVVANSDVPSFSVSNERGMELALLGLENLADVEIHDLFECHKCDVTFDDKDSYLQHLLSFHQRTTRRYRIGPSVGDGVIIKDGKFECQFCHKVFTERRRYXXXXNGRQAEDSSGLENVERTDKSSLREDMPSRSSRMDALIEIAQSSIMEDCDMEPASEVAAGSLDQDMNLVSEQQMEDSLNGTNEVQDLDQQGSPQLHMDVEEETDDDSQVIDAKMVTCLDHTGLLRINEQNGIPTIEGFDNSGIDVGGASQGPLLHISCKDKISESGENENFCCSNTKEKSKFKEDNSNKNELGIGLDGCKDVPVRTDVQEILMPDSDKNVIDSRVSKSPVSQMQSLDCSPAFSSDKVGKQSCTEDHEHNNVKRFQEMDDSLSLPDVQTDTVNKTVMEGTYPTPVQVESQEVMQLTSACVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQINVLDS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc102g00019 792 MobiDBLite consensus disorder prediction 453 474 - -
Stsc102g00019 792 SUPERFAMILY DNA-binding domain 253 328 IPR016177 GO:0003677
Stsc102g00019 792 MobiDBLite consensus disorder prediction 514 549 - -
Stsc102g00019 792 ProSitePatterns Zinc finger C2H2 type domain signature. 380 401 IPR013087 -
Stsc102g00019 792 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 245 317 IPR001739 GO:0003677
Stsc102g00019 792 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 537 IPR037472 -
Stsc102g00019 792 MobiDBLite consensus disorder prediction 59 91 - -
Stsc102g00019 792 Pfam Methyl-CpG binding domain 254 316 IPR001739 GO:0003677
Stsc102g00019 792 MobiDBLite consensus disorder prediction 514 535 - -
Stsc102g00019 792 MobiDBLite consensus disorder prediction 445 474 - -
Stsc102g00019 792 Gene3D - 233 338 - -
Stsc102g00019 792 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc102g00019 Stsc-Chr102 84393 88190 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc102g00019 MBD 0.00015 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc102g00019 - - adu:107468625 1308.12