LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc102g00011	ATGATGGAGATGGAGGAGCAGTTGCAGAGCGATCCATGGGAGTGGGAGAAGCCAATGGCCGCTTATCTGCTCCGCTACCACTCCCACCAGCTCCGGTCCATAGCTTCCTCTCCCGATCCCAATCTTCACTACGCTCTCTTCATCGACTTCGCAGAGTTGATGGAGGAACATCCTCACCTTGCGCGTCTCATATTCTCCGAACCCACCCCTTACTTGCAAGCCTTCGACAATGCTGCTCTCTTGTCTCACAGAATCGTGTTGAGAGATTTGGAGCAAGAGAAGAATGCTGTTGAGAAGAATTTCATTCATGTTCGAATTAACATCAGTGGCTCTCCCCTTGAATTCTCTGAGACGTTTCCGAGTATAGGGCGCGTTCGAGTGCAGCATCGCGGGATTCTTCTCACTGTGAAAGGAACTGTAATCAGGTCTGGAGCAATCAAGATGCATGAAGGAGAGAGGAAGTATATGTGCAACAAATGCAAGAAGAGCTTCACAGTTTATCCTGAGGTTGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCCTTTCAGAAGTCGAAGCCCTGTGGAGGCACGAAATTCCAGTATGTAGAAAATACTGTAGTATGCCATGATTATCAGGAGATAAAAATCCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCCATTCCTCGTTCAATTCTTGTCATCTTGCAGGATGATCTGGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTAACTGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGCTGTGACCTTGATCCTGTATTAATAGCCAACAATGTAAGGAGGACCAATCAACTGAAGTCAGAAATGGACATTTCTGATGAATTAGTTACAAAATTCAAGCAGTTTTGGGAACATTTCAAAGATGCACCCTTAAAAGGGAGGAATGCTATTCTTCAGGGAATTTGCCCACAAGTATTTGGCCTGTTTACTGTCAAGCTGGCTGTTGCATTAACACTTATAGGAGGTGTCCAACATGTCGATGCTTCTGGAACAAGGGTAAGAGGGGAATCCCACTTACTCTTGGTTGGTGATCCTGGCACCGGAAAGTCTCAGTTTCTGAAATTTGCTGCGAAATTGAGCAATAGATCTGTTATTACCACTGGGCTGGGAAGCACAAGTGCTGGATTGACAGTTACTGCAGTGAAGGATGGAGGTGAGTGGATGCTGGAAGCTGGAGCCCTTGTTTTAGCAGATGGAGGATTGTGCTGCATAGATGAATTTGATAGCATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTAGCCAAGGCTGGTCTTGTAACAACCCTCAGCACTAGAACAACGGTATTTGGTGCCACAAATCCTAAAGGGCAATATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTCTACTTAGCAGGTTTGATATTGTCCTTGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCTGATAGAGCCAACAACAATGAAGATCTAGCAAAAGTCTGGCCACTTTCAACACTCAAGAGGTATTTACACTATGTGAAAGAAACTTTCAGGCCAGTCCTTACAAGAGAGGCCGAAAGAGTCATATCCAGCTATTATCAACTTCAAAGGAAGTCTGCAACTCATAATGCAGCTAGGACCACCGTCCGGATGCTGGAAAGTTTAATACGCCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAAGTGACCCGATTAGATGCCGTCACAGCAATTTTATGCGTGGAGTCCTCCATGACTACCTCAGCTATAGTGGATTGTATTGGGAATGCCCTGCACTCCAATTTTACTGAAAACCCTGATCAGGAATATGCTAAACAAGAAAGTTTGATCCTGGAAAAGTTGGGAGCAATAGATGACTTCTCTGATATGAACAGAACGGGAGACTGA	2007	0.4494	MMEMEEQLQSDPWEWEKPMAAYLLRYHSHQLRSIASSPDPNLHYALFIDFAELMEEHPHLARLIFSEPTPYLQAFDNAALLSHRIVLRDLEQEKNAVEKNFIHVRINISGSPLEFSETFPSIGRVRVQHRGILLTVKGTVIRSGAIKMHEGERKYMCNKCKKSFTVYPEVEARNSISLPSICPFQKSKPCGGTKFQYVENTVVCHDYQEIKIQESTQVLGVGAIPRSILVILQDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRTNQLKSEMDISDELVTKFKQFWEHFKDAPLKGRNAILQGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRANNNEDLAKVWPLSTLKRYLHYVKETFRPVLTREAERVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAVTAILCVESSMTTSAIVDCIGNALHSNFTENPDQEYAKQESLILEKLGAIDDFSDMNRTGD	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc102g00011	668	CDD	MCM9	313	617	-	-
	Stsc102g00011	668	Coils	Coil	80	107	-	-
	Stsc102g00011	668	Gene3D	-	125	253	IPR012340	-
	Stsc102g00011	668	Pfam	MCM AAA-lid domain	536	617	IPR041562	-
	Stsc102g00011	668	Gene3D	-	149	205	-	-
	Stsc102g00011	668	SMART	AAA_5	352	501	IPR003593	GO:0016887
	Stsc102g00011	668	Pfam	MCM P-loop domain	312	515	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc102g00011	668	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	320	627	IPR027417	-
	Stsc102g00011	668	SMART	mcm	118	619	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Stsc102g00011	668	SUPERFAMILY	Nucleic acid-binding proteins	43	260	IPR012340	-
	Stsc102g00011	668	FunFam	Probable DNA helicase MCM9	288	622	-	-
	Stsc102g00011	668	Pfam	MCM OB domain	125	253	IPR033762	-
	Stsc102g00011	668	ProSiteProfiles	MCM family domain profile.	310	513	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc102g00011	668	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	437	450	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc102g00011	668	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	487	495	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc102g00011	668	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	351	366	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc102g00011	668	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	409	423	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc102g00011	668	Gene3D	-	284	623	IPR027417	-
	Stsc102g00011	668	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	42	643	IPR031327	GO:0003677\|GO:0005524\|GO:0032508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc102g00011	Stsc-Chr102	36263	42761	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc102g00011	19	642	Core DNA Replication Machinery Family	AT2G14050	76.077	0.0	1007

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc102g00011	K10738		-	gmx:100776255	1130.93