Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc102g00005 ATGGTGCTTCACCACCATGGCAGAAAACTCATGCCAGAAATCTGCGAGTCCCTCTGCCACGTGGACCAGAATTGTTCTTCTTCTTCAGACTGTGACGGTTGCCTCAAGCTCTGCCTCACCAACCCCCAATACTACTACTATTTTCCCCAACCACCGCCACCGCCACCGCCACCTATTCCTCCTCTCCCTCTAGACGACACCTCAACCAACGGAAAATCCCACGCGCTCTCGCCGTACCTCGTCCTCGCTCTCTCTGTTCTCGGAGCTGCTTTCTTCGTAGTTATCTGCTGCGCAATCTTCGCCACTCTCTTCAGACGGAGGAGAAGATCCTCATCGCTGCTACTTCGAACACAGGATCCCCGTGACGATTTCTTCGTGGATGAGGAGCACGGTCCTATGGTGGACCACCCGATCTGGTACATCCGTACACCAGGTCTTCAAGAATCGATCATCAACGCAATCGCTGTTTGTAGGTATAAGAAAGGTGAGGGTTTGATTGAAGGAACAGAGTGCTCCGTTTGTTTGAGCGAGTTTCAAGAAGATGAGAGTGTTAGGCTTTTGCCAAAGTGTAATCATGCTTTTCATTTGATTTGTATTGATACATGGCTTAGGTCACACACCAATTGCCCCATGTGTAGAGCTCCAATTGTTAACAACAACACTCTTAGGGTTCCTTCTATGCATAATCATAATCATAATCTTAATGTTCTTGATCCAAGTTCAAGTTCAAGTTCTAGTTCAAGTTCCTTGGAGGTTGGAGCTGTGGAAAATATTAACAATGAAACCATTACAGGAATGGAAAATACTCAAAATAGTGGTTTTGAATTGAGGAATACGGAAGAGCATGATGATGAAGAAGAAGAAGGTGAAGTGGGAGGTGAAAGAGTAATAAGCATGATTAGGCCAAGAAGGTCTGTTTCTCTGGATTCTTCTTCTATTGCAGATATTGCACTTGCTGCAGCTGCATCTGCTCTATCGGCGGATTCGGATTCGGATACAAATAGAGTTGTTGGGGATGAGAATGAGAATGAGAGTGAAGGAATTGGTTCAAAGAGGGTTAATGGAAATGAGAATGTGGCAAGTAGTTCAAAAGGGAGAGGGAGAGGGACAGGGAGAGGGAGAAGCTCTTCCTTCAGGATGAGGTATCTGCATAGTGTTGTTCCTAGTTCAATGAAGAGGTCGCGTTCCTACAATGGTAAATCCCTCGTGTCTTCTTTGTATAGCCGCGGCCACACAAACAAGAAGCAAAATGCTACTAATAATATCAGAAGCTTTTAG 1278 0.4554 MVLHHHGRKLMPEICESLCHVDQNCSSSSDCDGCLKLCLTNPQYYYYFPQPPPPPPPPIPPLPLDDTSTNGKSHALSPYLVLALSVLGAAFFVVICCAIFATLFRRRRRSSSLLLRTQDPRDDFFVDEEHGPMVDHPIWYIRTPGLQESIINAIAVCRYKKGEGLIEGTECSVCLSEFQEDESVRLLPKCNHAFHLICIDTWLRSHTNCPMCRAPIVNNNTLRVPSMHNHNHNLNVLDPSSSSSSSSSSLEVGAVENINNETITGMENTQNSGFELRNTEEHDDEEEEGEVGGERVISMIRPRRSVSLDSSSIADIALAAAASALSADSDSDTNRVVGDENENESEGIGSKRVNGNENVASSSKGRGRGTGRGRSSSFRMRYLHSVVPSSMKRSRSYNGKSLVSSLYSRGHTNKKQNATNNIRSF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc102g00005 425 SUPERFAMILY RING/U-box 165 219 - -
Stsc102g00005 425 MobiDBLite consensus disorder prediction 348 370 - -
Stsc102g00005 425 Pfam Ring finger domain 170 213 IPR001841 -
Stsc102g00005 425 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 68 240 IPR044675 -
Stsc102g00005 425 MobiDBLite consensus disorder prediction 405 425 - -
Stsc102g00005 425 MobiDBLite consensus disorder prediction 230 252 - -
Stsc102g00005 425 SMART ring_2 171 212 IPR001841 -
Stsc102g00005 425 MobiDBLite consensus disorder prediction 333 347 - -
Stsc102g00005 425 FunFam RING-H2 finger protein ATL54 146 219 - -
Stsc102g00005 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 221 IPR013083 -
Stsc102g00005 425 MobiDBLite consensus disorder prediction 324 381 - -
Stsc102g00005 425 CDD RING-H2_EL5-like 170 213 - -
Stsc102g00005 425 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc102g00005 Stsc-Chr102 13616 14893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc102g00005 8 217 C3H Transcription Factor Family AT1G72220 43.304 5.37e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc102g00005 - - adu:107468728 562.377