Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1019g00001 ATGTCTACTAACATTACTGCTTCTCCTAGTGATGTGTCAACCTTGAACAACTCAAATTTAAATAAGGTAGTTTCATGTTCAGAAGATTCGAGTAATTGCAAGATATACAAAGGCGTGAGGAAGAGGAAATGGGGCAAATGGGTGTCCGAAATTAGGCTTCCGAATAGCCGCGAAAGGATATGGTTGGGTTCTTATGATACCCAAGAAAAGGCGGCCCGAGCCTTCGACGCCGCCCTCTATTGCCTTCGCGGCTGCCACGCCAGTTTCAATTTCCCGGACACACCTCTTAAGTTGGAGATCAACAACAATGCAAGTCACTACCATTCTCTCTCCCACCAAGAAATTCAAGAAGTTGCATCAAAATTCGCCAATAATATTGATGCATCAAATAATGAGAATAATGCTATTACCAATGAGGAGGAGGAAGAAGAACCATCATCAATGGAGTCATCACAAAATGGCTCTAATAGTGCAAGCTATGTGTATGATTATGATGGGAATAATAATAATGATAGTAATAGTAATAAAAACGTGCAAGTGGACCAGGGGGACATAGATTGGACATTTTTGAACGTGTTGGATGATCAAAATGATTCGAATTTTGATAACACTATTGGCTATGATTTTGGCCTCTACTATGGAGGGATAGATAAGGTGTACTCAGGTGAGTTTTTGCATACTAGTACACCACCAACAATTTATCAGGATAACAATGGTGATGGTGAAGGTGATGGTGATGCTTTTTCTGATCATTCATTCCTTTGGAGTTGGAATTTTTGA 780 0.4013 MSTNITASPSDVSTLNNSNLNKVVSCSEDSSNCKIYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGCHASFNFPDTPLKLEINNNASHYHSLSHQEIQEVASKFANNIDASNNENNAITNEEEEEEPSSMESSQNGSNSASYVYDYDGNNNNDSNSNKNVQVDQGDIDWTFLNVLDDQNDSNFDNTIGYDFGLYYGGIDKVYSGEFLHTSTPPTIYQDNNGDGEGDGDAFSDHSFLWSWNF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1019g00001 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 172 - -
Stsc1019g00001 259 MobiDBLite consensus disorder prediction 148 179 - -
Stsc1019g00001 259 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Stsc1019g00001 259 Pfam AP2 domain 36 84 IPR001471 GO:0003700|GO:0006355
Stsc1019g00001 259 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Stsc1019g00001 259 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Stsc1019g00001 259 MobiDBLite consensus disorder prediction 136 179 - -
Stsc1019g00001 259 CDD AP2 34 94 IPR001471 GO:0003700|GO:0006355
Stsc1019g00001 259 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Stsc1019g00001 259 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Stsc1019g00001 259 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Stsc1019g00001 259 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1019g00001 Stsc-Chr1019 12088 13005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1019g00001 30 259 AP2-EREBP Transcription Factor Family AT1G19210 41.810 1.96e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc1019g00001 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1019g00001 - - gmx:112999363 214.927