Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1012g00003 ATGAAAGATGAATTGGACTTAGAAGCAGGCCAGGGCCTGGAGCTCAGATCTTCCACCACGCACATGGACACCGACATGGGCCTCTTCTTGGAGGAAGCCGAGAAAGTCAAGGCTGAGATGGCCACGCTCCGAGATATACTGGAAAGGCTCCAACAGGCCAACGAAGAGGGCAAATCACTCCACAAGCCCGACGCTCTCAAATCCCTAAGAACAAGAATCAACTCAGATATTGTCACTCTTCTCAAGAAGGCCCGGGCTATTAAAGCCCATCTCGAAGACATGGACAAAGCAAATTCCGCTAACAGGAGACTCTCCGGCCTCAAGGACGGCACCACAACCGCCATCTACCGCACTCGGATCGCCGTCACCAACGGACTCCGGAAGAAGCTGAAGGAGCTGATGATGGAGTTCCAGGGGCTGAGGCAGAGGATGATGACGGAGTACAAGGACACCGTCGGCAGAAGGTACTTCACGGTTACCGGCGAGTATCCCGACGAGGAAGTGATCGAGAAGATCATTTCGAGCGGCGAAGAAGAGGAGTTTTTGGGGAAGGCGATTCGAGAGCATGGGAGGGGGAAAGTGATGGAGACTGTGGTTGAGATTCAGGACAGGCATGACGCGGCCAAAGAGATCGAGAAGAGCTTGCTTGAGTTGCATCAGGTGTTCTTGGATATGGCGGTTATGGTGGAGACACAAGGGGAGAAGATGGATGATATTGAGCACCATGTGATTCATGCTTCTCACTATGTTAAGGATGCTAACAAAGAACTTGTGACAGCTAGGAAGTATCAGAGGAACAGCAGGAAGTGGCTCTGCATTGGGATCATCATTCTTCTCATCCTCATCCTTGTTATTGTCATTCCCATCGCCACCAGTCTCAGAAGCTCTTGA 891 0.5152 MKDELDLEAGQGLELRSSTTHMDTDMGLFLEEAEKVKAEMATLRDILERLQQANEEGKSLHKPDALKSLRTRINSDIVTLLKKARAIKAHLEDMDKANSANRRLSGLKDGTTTAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKDTVGRRYFTVTGEYPDEEVIEKIISSGEEEEFLGKAIREHGRGKVMETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVETQGEKMDDIEHHVIHASHYVKDANKELVTARKYQRNSRKWLCIGIIILLILILVIVIPIATSLRSS 296
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc1012g00003 296 ProSitePatterns Syntaxin / epimorphin family signature. 204 244 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc1012g00003 296 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 23 155 - -
Stsc1012g00003 296 PANTHER SYNTAXIN 37 279 IPR045242 -
Stsc1012g00003 296 SMART SynN_4 21 149 IPR006011 GO:0016020
Stsc1012g00003 296 Coils Coil 30 56 - -
Stsc1012g00003 296 SUPERFAMILY t-snare proteins 24 253 IPR010989 GO:0016020|GO:0016192
Stsc1012g00003 296 CDD SynN 26 179 IPR006011 GO:0016020
Stsc1012g00003 296 CDD SNARE_syntaxin1-like 197 259 - -
Stsc1012g00003 296 Gene3D - 193 293 - -
Stsc1012g00003 296 Gene3D - 21 152 - -
Stsc1012g00003 296 Coils Coil 123 143 - -
Stsc1012g00003 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Stsc1012g00003 296 SMART tSNARE_6 193 260 IPR000727 -
Stsc1012g00003 296 FunFam Syntaxin 132 191 291 - -
Stsc1012g00003 296 Pfam Syntaxin 29 233 IPR006011 GO:0016020
Stsc1012g00003 296 Pfam SNARE domain 235 286 IPR000727 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc1012g00003 Stsc-Chr1012 15497 16387 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1012g00003 6 272 SNARE and Associated Proteins AT1G08560 63.469 7.91e-121 347
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1012g00003 K08486 - gmx:100816016 445.277