Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc1012g00003 | ATGAAAGATGAATTGGACTTAGAAGCAGGCCAGGGCCTGGAGCTCAGATCTTCCACCACGCACATGGACACCGACATGGGCCTCTTCTTGGAGGAAGCCGAGAAAGTCAAGGCTGAGATGGCCACGCTCCGAGATATACTGGAAAGGCTCCAACAGGCCAACGAAGAGGGCAAATCACTCCACAAGCCCGACGCTCTCAAATCCCTAAGAACAAGAATCAACTCAGATATTGTCACTCTTCTCAAGAAGGCCCGGGCTATTAAAGCCCATCTCGAAGACATGGACAAAGCAAATTCCGCTAACAGGAGACTCTCCGGCCTCAAGGACGGCACCACAACCGCCATCTACCGCACTCGGATCGCCGTCACCAACGGACTCCGGAAGAAGCTGAAGGAGCTGATGATGGAGTTCCAGGGGCTGAGGCAGAGGATGATGACGGAGTACAAGGACACCGTCGGCAGAAGGTACTTCACGGTTACCGGCGAGTATCCCGACGAGGAAGTGATCGAGAAGATCATTTCGAGCGGCGAAGAAGAGGAGTTTTTGGGGAAGGCGATTCGAGAGCATGGGAGGGGGAAAGTGATGGAGACTGTGGTTGAGATTCAGGACAGGCATGACGCGGCCAAAGAGATCGAGAAGAGCTTGCTTGAGTTGCATCAGGTGTTCTTGGATATGGCGGTTATGGTGGAGACACAAGGGGAGAAGATGGATGATATTGAGCACCATGTGATTCATGCTTCTCACTATGTTAAGGATGCTAACAAAGAACTTGTGACAGCTAGGAAGTATCAGAGGAACAGCAGGAAGTGGCTCTGCATTGGGATCATCATTCTTCTCATCCTCATCCTTGTTATTGTCATTCCCATCGCCACCAGTCTCAGAAGCTCTTGA | 891 | 0.5152 | MKDELDLEAGQGLELRSSTTHMDTDMGLFLEEAEKVKAEMATLRDILERLQQANEEGKSLHKPDALKSLRTRINSDIVTLLKKARAIKAHLEDMDKANSANRRLSGLKDGTTTAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKDTVGRRYFTVTGEYPDEEVIEKIISSGEEEEFLGKAIREHGRGKVMETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVETQGEKMDDIEHHVIHASHYVKDANKELVTARKYQRNSRKWLCIGIIILLILILVIVIPIATSLRSS | 296 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc1012g00003 | 296 | ProSitePatterns | Syntaxin / epimorphin family signature. | 204 | 244 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Stsc1012g00003 | 296 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 23 | 155 | - | - | |
| Stsc1012g00003 | 296 | PANTHER | SYNTAXIN | 37 | 279 | IPR045242 | - | |
| Stsc1012g00003 | 296 | SMART | SynN_4 | 21 | 149 | IPR006011 | GO:0016020 | |
| Stsc1012g00003 | 296 | Coils | Coil | 30 | 56 | - | - | |
| Stsc1012g00003 | 296 | SUPERFAMILY | t-snare proteins | 24 | 253 | IPR010989 | GO:0016020|GO:0016192 | |
| Stsc1012g00003 | 296 | CDD | SynN | 26 | 179 | IPR006011 | GO:0016020 | |
| Stsc1012g00003 | 296 | CDD | SNARE_syntaxin1-like | 197 | 259 | - | - | |
| Stsc1012g00003 | 296 | Gene3D | - | 193 | 293 | - | - | |
| Stsc1012g00003 | 296 | Gene3D | - | 21 | 152 | - | - | |
| Stsc1012g00003 | 296 | Coils | Coil | 123 | 143 | - | - | |
| Stsc1012g00003 | 296 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 198 | 260 | IPR000727 | - | |
| Stsc1012g00003 | 296 | SMART | tSNARE_6 | 193 | 260 | IPR000727 | - | |
| Stsc1012g00003 | 296 | FunFam | Syntaxin 132 | 191 | 291 | - | - | |
| Stsc1012g00003 | 296 | Pfam | Syntaxin | 29 | 233 | IPR006011 | GO:0016020 | |
| Stsc1012g00003 | 296 | Pfam | SNARE domain | 235 | 286 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc1012g00003 | Stsc-Chr1012 | 15497 | 16387 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc1012g00003 | 6 | 272 | SNARE and Associated Proteins | AT1G08560 | 63.469 | 7.91e-121 | 347 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc1012g00003 | K08486 | - | gmx:100816016 | 445.277 |