Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1012g00002 ATGGGAGATAATAACAATGTGAACCTTCCACCGGGGTTTCGGTTTTATCCTACAGATGAAGAGCTTGTGGTTCATTTTCTTCATAGAAAGGCAGCACTCTTACCTTGCCACCCTGATGTCATCCCTGATCTTGATCTCTATCCTTATGATCCTTGGGAACTTGATGGTAGAGCTTTGGGAGAGGGAAAGCAATGGTACTACTACAGCAGGAGGACACAGAATAGGGTTACTGAGAATGGATATTGGAAAGCAACAGGAATGGAAGAACCTGTGATGACAAGCTCAAGCAACAAGAGCGTTGGAATCAAGAAATTCTTTGTGTTCCATCTTGGTGATGAAGACACTACTTCTGCTATCAAAACCAATTGGATAATGCAAGAATATTGCCTTTCAGATTATGCTTCCTCCTCTACCAGCAGATCATCCAAGAGAAAATCACAATCAAAAACAGATTACAGTAAATGGGTGATATGTCGTGTTTATGAGCGCAATGGAGATGATGATGATGGAACTGAGCTGTCTTGTTTGGATGAAGTTTTCTTGTCACTGGATGATCTTGATGAAATAAGCTTACCAAATTAG 582 0.4089 MGDNNNVNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWELDGRALGEGKQWYYYSRRTQNRVTENGYWKATGMEEPVMTSSSNKSVGIKKFFVFHLGDEDTTSAIKTNWIMQEYCLSDYASSSTSRSSKRKSQSKTDYSKWVICRVYERNGDDDDGTELSCLDEVFLSLDDLDEISLPN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1012g00002 193 Gene3D NAC domain 18 167 IPR036093 GO:0003677|GO:0006355
Stsc1012g00002 193 PANTHER NAC TRANSCRIPTION FACTOR 56 9 167 - -
Stsc1012g00002 193 FunFam NAC domain-containing protein 104 18 166 - -
Stsc1012g00002 193 SUPERFAMILY NAC domain 6 162 IPR036093 GO:0003677|GO:0006355
Stsc1012g00002 193 ProSiteProfiles NAC domain profile. 9 163 IPR003441 GO:0003677|GO:0006355
Stsc1012g00002 193 Pfam No apical meristem (NAM) protein 10 130 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1012g00002 Stsc-Chr1012 10691 11694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1012g00002 1 178 NAC Transcription Factor Family AT1G61110 41.237 1.15e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc1012g00002 NAM 8.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1012g00002 - - gmx:100793989 322.783