Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1010g00003 ATGAGCCGTGTTCTAAGCCCTGTCCCAGTGTCACCTCCTCCTCCAACATCATCTTCCTCACCAATCAGCAACAAGAACAGCATGCCTATGTTCAACTATGGCCTTGTTGTGGTTGGAACCACCGTCATAGTGCTTATCATCTACAACCTCCTCATCATCAAACACTGTAACCGCCGCCGTGACATGTCATCAGATCAGTTTCCAACAAGGAATAATAATAGGTTTATAGAGGTGGTTATTACTGCTGCTAATTCCGGTGAAGGAATTAGAAGCTTTGAAAACAATAATTACTATGCAGCAGCAGCATCACAACAAAGGAATCATTTGCTCTCAAGTTTCAAGTACAAGAAAGAAAAAATGACCTCATCGTCAGCATCAAAAGAAGGTTCTTTTGCTTTTGTTGATGGTGGTGATAGCGATGAGTGCCCTGTTTGTTTGTCAGTGTTTGAAGAAGGTGAAGAAGTGAGGAGGCTTCCAAGGTGCAAGCACTCGTTTCATGCTCTTTGTATAGACATGTGGCTTTACTCTCACTTTGATTGCCCAGTTTGTAGAACGCCTGTTGGGCCCTTTAGCCACCCTTTTCCCGCAGCTAAGAATTCTCGCAGCGGTGGTAGTGATGGTGGTGGTGGTGGTGTCCGCGGCATCTCGGCTTGA 654 0.4541 MSRVLSPVPVSPPPPTSSSSPISNKNSMPMFNYGLVVVGTTVIVLIIYNLLIIKHCNRRRDMSSDQFPTRNNNRFIEVVITAANSGEGIRSFENNNYYAAAASQQRNHLLSSFKYKKEKMTSSSASKEGSFAFVDGGDSDECPVCLSVFEEGEEVRRLPRCKHSFHALCIDMWLYSHFDCPVCRTPVGPFSHPFPAAKNSRSGGSDGGGGGVRGISA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1010g00003 217 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 187 IPR044675 -
Stsc1010g00003 217 MobiDBLite consensus disorder prediction 196 217 - -
Stsc1010g00003 217 Pfam Ring finger domain 140 184 IPR001841 -
Stsc1010g00003 217 CDD RING-H2_EL5-like 141 184 - -
Stsc1010g00003 217 SMART ring_2 142 183 IPR001841 -
Stsc1010g00003 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 189 IPR013083 -
Stsc1010g00003 217 MobiDBLite consensus disorder prediction 1 23 - -
Stsc1010g00003 217 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Stsc1010g00003 217 SUPERFAMILY RING/U-box 141 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1010g00003 Stsc-Chr1010 13035 13980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1010g00003 34 193 C3H Transcription Factor Family AT5G17600 35.000 2.32e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1010g00003 - - adu:107479105 270.396