LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc100g00012	ATGGCAGCTGGGAGAGTTGGTGTTTTGAAGAGGAGGGAATCTTGTAAATACGGTTCCATTAAGGAATCTGACTCTTACTATTACAAAGATGGTTCTTTTATGGTGGAAGCTTCACCTGCCTCAAGTTCTCATGGTGGTGAAGCGTTGCCTCGCGCTGAAAAGAGGAGGAAAGTTTCTCCCGATGCATGGGACATGGGAGAGAATGAAGTGAGAGTTTCATCTAAAAACAGGGTCACCCACGTTGTTGGCCTGCCTCCTACTACTCCATCTCCAGCTGATCCGCCTCTTGTGCTGCCGGGAGAGCAGTCAGGTGATTTTGACAAAGGTGTGGATTGCTTGGTGGAAAACAAGGCGCAGGGATGGAACATTGCAATGTCGAGGTGGGCTTCTGCTGATTTTTCACCAGAGGATGCATCTTATGATGAGGACAAGGATGGTAAAGTGAGCTTAACTACCGAAAGTGGTGAGATCCTAGAAGGAAGTTCGGGAGGGAAAGTTAGTAGATCAACTGGGAGTACTAAAAGAGATGATTCAGGCCTTTCTTCTGATGGTAATGACTCCGAAGAGGATATCTCTGTTGATTCCATTGAGGAGGAGGATGTGGAACAAGGTGAATCTGATGATGAGAATCATGGAGGTTCTAGGCAGGTGCAGAGGAGTATAAACATGCTCAACAGTTGCAGAAGCGTGTTTGAGTTTGAAATGATTAAGAAGATAAATGAAGGAACTTATGGTGTCGTCTATAAAGCTAAGGATAAGAAGATGGGTGAAATAGTTGCCTTGAAGAAGGTGAAGATGAACTTAGATAAGGAAGGCTTTCCTTTGACATCCTTGAGGGAAATGAACATTCTTTTGTCGTTTAACCACCCCTCCATTGTGGATGTTAAAGAAGTAGTAGTTGATGATTTTGACGGTGTTTTTATGGGTGTTGACTATCTTCATGATAATTGGGTTCTTCACAGAGATTTAAAGACGTCAAACATTCTGCTGAACAACAAAGGGGAACTGAAAATATGTGATTTTGGATTGTCTCGCCAGTATGGGAGCCCGCTGAAGCCATATACGCCACTTGTGGTTACTCTACGATACAGAGCACCCGAGCTTTTGTTAGGTACTAAAGAATACTCCACAGCCATCGATATGTGGTCTGTGGGTTGCATAATGGCTGAATTAGTTACCAGAGAGACACTCTTCAAGGGTAAAAATGAAGTTGAACAACTTGATCAGATTTTTCGAACTTTGGGGACCCCAGAGGAGAATATTTGGCCCGGATTATCCAAATTGCCTGGGTCTAAAGCAAAATTTGTGAAGCAACCGTATAACATGCTCCGGAAGAAGTTTCCAGTCGCATCTTTTACTGGTCAGCCAGTTCTATCTGAGTCAGGATTTGACTTGTTGAGCAGGCTTCTAACTTATGACCCCGAAAAGAGGATTACAGCTAAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCCCTTCCTAATTCTGATTTCAAGCCTATTTCCCCATTTCTTTGCTAG	1524	0.437	MAAGRVGVLKRRESCKYGSIKESDSYYYKDGSFMVEASPASSSHGGEALPRAEKRRKVSPDAWDMGENEVRVSSKNRVTHVVGLPPTTPSPADPPLVLPGEQSGDFDKGVDCLVENKAQGWNIAMSRWASADFSPEDASYDEDKDGKVSLTTESGEILEGSSGGKVSRSTGSTKRDDSGLSSDGNDSEEDISVDSIEEEDVEQGESDDENHGGSRQVQRSINMLNSCRSVFEFEMIKKINEGTYGVVYKAKDKKMGEIVALKKVKMNLDKEGFPLTSLREMNILLSFNHPSIVDVKEVVVDDFDGVFMGVDYLHDNWVLHRDLKTSNILLNNKGELKICDFGLSRQYGSPLKPYTPLVVTLRYRAPELLLGTKEYSTAIDMWSVGCIMAELVTRETLFKGKNEVEQLDQIFRTLGTPEENIWPGLSKLPGSKAKFVKQPYNMLRKKFPVASFTGQPVLSESGFDLLSRLLTYDPEKRITAKDALLHDWFHEAPLPNSDFKPISPFLC	507

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc100g00012	507	Gene3D	Phosphorylase Kinase; domain 1	216	309	-	-
	Stsc100g00012	507	Pfam	Protein kinase domain	233	301	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc100g00012	507	Pfam	Protein kinase domain	305	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc100g00012	507	Gene3D	Transferase(Phosphotransferase) domain 1	310	489	-	-
	Stsc100g00012	507	PANTHER	CELL DIVISION PROTEIN KINASE	232	301	-	-
	Stsc100g00012	507	MobiDBLite	consensus disorder prediction	183	206	-	-
	Stsc100g00012	507	MobiDBLite	consensus disorder prediction	48	74	-	-
	Stsc100g00012	507	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	318	330	IPR008271	GO:0004672\|GO:0006468
	Stsc100g00012	507	FunFam	cyclin-dependent kinase G-2 isoform X1	218	314	-	-
	Stsc100g00012	507	SMART	serkin_6	233	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc100g00012	507	SUPERFAMILY	Protein kinase-like (PK-like)	229	495	IPR011009	-
	Stsc100g00012	507	ProSiteProfiles	Protein kinase domain profile.	233	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc100g00012	507	MobiDBLite	consensus disorder prediction	38	100	-	-
	Stsc100g00012	507	MobiDBLite	consensus disorder prediction	154	178	-	-
	Stsc100g00012	507	FunFam	Cyclin-dependent kinase G-2	288	505	-	-
	Stsc100g00012	507	MobiDBLite	consensus disorder prediction	152	218	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc100g00012	Stsc-Chr100	62253	66412	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc100g00012	232	489	Core Cell Cycle Gene Families	AT3G48750	40.956	1.97e-69	222

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Stsc100g00012		Pkinase	3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc100g00012	K08818		-	gmx:100788840	557.755