Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc100g00011 ATGGCCAACACCCAAACACGCCCTAACACCACCACCACCACAACCATAGACCCAAACAGCGGTTTCAACCCACATTCCAGAACCTTCCACAGCCTCCGTCCTAATATCTCCCTCCCTCCTCCCTCTCTCCCTCTCTCCATCACCGAATACACACTCTCTCTCATCCCCCCCGCCGCCACCGCAGGCGTAACCACCGCTCTCATCGACGTTGGCGCCGACATCCGCCTCTCCTATTCTGTCCTCCTCCGCCGCATAAAATCCCTCTCAATCTCCATCCAAACCCTGACACCACTCAAAAAAGGACACGTGGCACTCATCCTCACCCCTCCTTCCGTACACGTTCCTGTACTCTATCTTTCCCTCTTATCCCTCGGAATCGTTATTTCTCCCGCCAACCCTCTCAGCTCACCGGCCGAGTTGACTCACCTGATCCAACTCGTGAACCCTAAAATCGCCTTCACAACCTCCAAAACCGCCGCGAAAATCCCCAAACTACCATTCGGCACCGTCCTCCTCGACTCACCGGAGTTCCTCTCCATGCTCGAGAACAACGAGTCAGGAGCTAGCGAACTCGAACGAGTCGAGGTGAGTCAGTCCGATCCAGCAGCGATTCTCTTCTCTTCCGGAACCACGGGAAGAGTGAAAGGCGTTCTCCTCACACACCGTAACCTCATCGCTCTAATCGGAGGGTTCTACCAACTGAAGCACATGACGGCGGCGCAAGAAGAGTCGCCGGAGGAAGAGAATTGGTCGGCGCTGGTGACGGTGCCGGTGTTCCACGTGTTCGGGTTCTTCATGCTGATAAGAGGCTTGGCGAGTGGTGAAACGATGGTTCTAATGGAGAGGTTCGATTTCGAAGGGATGCTGAGGGCGGTGGAGAAATACAAGATAAGTTACATGCCAGTGTCGCCGCCGCTGGTGGTGGCTCTGACGAAGTCGGAGGTGGCAAAGAAGTATGATCTGAGTTCGTTGCAGTTGTTAGGATCCGGTGGAGCTCCGCTGGGGAAAGAGGTGGTAGAAAGTTTCAATTCTAAGTTCCCCAACGTCGAAATTGTGGAGGGGTATGGTCTAACTGAAAGCTCAGGAGGAGCAGCAAGGATGATAGGGCCTGATGAGGCGAAACGACATGGTTCTGTTGGTCGATTAGCTGAGCACATGGAAGCTAAGATAGTTGACCCTATCACCGGTGAATCGTTGCCTCCCGGCCACAGAGGAGAGCTTTGGTTGCGCGGACCAACGATCATGAAATGTTATGTGGGAAATGAAGAGGCCACTGCTCAAACGTTGGATTCAGAGGGATGGTTGAAAACTGGTGATCTTTGTTATTTTGATTCTGATGGCTTTCTTTACATTGTGGATAGACTCAAGGAACTGATCAAATACAAAGCTTATCAGGTTCCCCCTGCTGAACTGGAAAATATACTTCATAACCATCCTGAAATTGCTGATGCTGCTGTAATACCGTATCCTGATGAAGAAGCAGGGGAAATTCCAATGGCATTTATTGTAAGAAAGCCAGGAAGTAACATCAATGCAGCTCAAGTCATGGAATTTGTGGCAAAGCAGGTTTCACCATACAAGAAGATACGGCGTGTCTCTTTTGTTAACTCGATACCAAAATCTCCGGCCGGAAAAATTTTGAGAAGACAATTGGTTGATCTTGCTCTAACAAGTGGTTCTTCCAAGTTGTGA 1692 0.5077 MANTQTRPNTTTTTTIDPNSGFNPHSRTFHSLRPNISLPPPSLPLSITEYTLSLIPPAATAGVTTALIDVGADIRLSYSVLLRRIKSLSISIQTLTPLKKGHVALILTPPSVHVPVLYLSLLSLGIVISPANPLSSPAELTHLIQLVNPKIAFTTSKTAAKIPKLPFGTVLLDSPEFLSMLENNESGASELERVEVSQSDPAAILFSSGTTGRVKGVLLTHRNLIALIGGFYQLKHMTAAQEESPEEENWSALVTVPVFHVFGFFMLIRGLASGETMVLMERFDFEGMLRAVEKYKISYMPVSPPLVVALTKSEVAKKYDLSSLQLLGSGGAPLGKEVVESFNSKFPNVEIVEGYGLTESSGGAARMIGPDEAKRHGSVGRLAEHMEAKIVDPITGESLPPGHRGELWLRGPTIMKCYVGNEEATAQTLDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELENILHNHPEIADAAVIPYPDEEAGEIPMAFIVRKPGSNINAAQVMEFVAKQVSPYKKIRRVSFVNSIPKSPAGKILRRQLVDLALTSGSSKL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc100g00011 563 Gene3D - 40 456 IPR042099 -
Stsc100g00011 563 FunFam 4-coumarate--CoA ligase 2 457 558 - -
Stsc100g00011 563 SUPERFAMILY Acetyl-CoA synthetase-like 64 556 - -
Stsc100g00011 563 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 25 553 - -
Stsc100g00011 563 Pfam AMP-binding enzyme C-terminal domain 470 545 IPR025110 -
Stsc100g00011 563 Pfam AMP-binding enzyme 63 461 IPR000873 -
Stsc100g00011 563 ProSitePatterns Putative AMP-binding domain signature. 204 215 IPR020845 -
Stsc100g00011 563 CDD 4CL 64 551 - -
Stsc100g00011 563 Gene3D - 457 557 IPR045851 -
Stsc100g00011 563 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc100g00011 Stsc-Chr100 55754 60648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc100g00011 9 563 Monolignol Biosynthesis Gene Families AT5G63380 59.823 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc100g00011 K01904 - gmx:100804044 800.045