Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc100g00008 ATGGTTGATTTGGAAATCCAGGTTCCAACCCCCTTCGACCCCTTCGCCGAGGCCAAAGAATCGGATGCCCCCGGAGCAAAGGAGTATGTCCATATCCGCATCCAGCAAAGGAATGGTAAAAAGAGCCTGACCACGGTGCAAGGGCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAAGACCTTAAGAAAGAGTTCTGCTGCAACGGCAATGTTGTTCAGGACAAGGAACTTGGCAAAATAATACAGCTCCAAGGGGATCAGCGCAAGAACGTTTCTCAGTTTCTGGTTCAGGCTGGTCTGGTGAGGAAGGACCAAATCAAGATTCATGGTTTTTGA 339 0.4897 MVDLEIQVPTPFDPFAEAKESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVRKDQIKIHGF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc100g00008 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Stsc100g00008 112 FunFam Eukaryotic translation initiation factor SUI1 2 112 - -
Stsc100g00008 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Stsc100g00008 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Stsc100g00008 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Stsc100g00008 112 Gene3D - 1 112 - -
Stsc100g00008 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 8 112 - -
Stsc100g00008 112 NCBIfam translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Stsc100g00008 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc100g00008 Stsc-Chr100 45036 46593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc100g00008 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 84.821 7.68e-70 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc100g00008 K03113 - gmx:100791423 221.09