Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc100g00006 ATGGTTTCTTCTGCTTCTTTTGCTTCTCTCTTACTCCCTCTTTACAACCCCGCTTTCCGCCCAAAACCAACAACTTCTCTTCCCGCTTTTCGCTCCATTCAATCTTCTGTGCTCCCAGCTACTGATGGATCTCAAGCACCCCGCAAAAGAACAAGAAGAATAGAAGGTCCTCGAAAAAGTATGGAAGATTCAGTTCAGCGCAAGATGGAGCAGTTTTATGAAGGGAAAGATGGGCCGCCTCTCCGTGTTCTTCCAATTGGTGGGCTGGGTGAAATTGGTATGAACTGCATGCTTGTTGGGAACTATGACCGCTATATCCTCATTGATGCCGGAGTTATGTTTCCAGACTATGATGAACTTGGAGTCCAAAAGATCATACCTGATACGACATTTATAAGAAAATGGAGCCACAAAATTGAAGCACTTGTTATAACACATGGTCATGAGGATCACATTGGTGCATTGCCTTGGGTCATCCCAGCATTGGATTCCAATACACCAATTTTCGCATCTTCCTTTACAATGGAGCTTATTAAAAAACGTTTGAAGGAGCATGGTATTTTCCTTCCATCTAGACTCAAGATATTTAGAACAAGAAAGAAGTTTATGGCCGGGCCATTTGAGATAGAGCCTATCAGGGTAACCCATTCTATTCCTGATTGCTGTGGATTGGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCGCTGGATGGGAAAGTTTTTGATCGCGAGGCTTTAGAGGAACTCTCCAAAGAAGGAGTAACACTGATGATGAGTGATTCAACAAATGTACTCTCACCAGGAAGGACAACAAGTGAATCTTCCGTTAAAGATGCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTATTACCACCCAATTTGCATCAAATCTGCATCGGCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCCGAAAGTTGGTATTCGTTGGCATGTCTTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCCTCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCTAAGGATCTGCTAATTGTAACAACAGGATCTCAAGCAGAACCGCGTGCTGCCTTGAATCTTGCATCATACGGAAGTAGTCATGCTTTCAAACTAACTAAGGAAGATATTATTTTGTATTCGGCCAAGGAGGAAGTACTTCGTATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAATCAAATGGCATTCGTCACACTGCTGTTATTAAAAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGGAGAGTCCTTTCTAATGGTTTCGTTTCCCTTGGAAGAGAGAATTTACAGTTGAAGTACAGTGATGGCGACAAAGCATTTGGTACATCAAGTGACCTCTTCATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATTTTCCGCCCCCAACGTGCAGACGGCTTGGCTGAAAACACCTTAAAAGGGAAGATAAGGATTACCACAAGATGCCTATGGCTTGACAAGGGAAAGTTGTTGGATGCACTGCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAAGTGTCCATTGGCTCACATGGAAAGAACCGTGGCCGAGGTCTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCTATTGCCACAGAAAATCCAGCTGCTGTTCTTGCTGAGGAGATAAACACGAAGTTATCTGGCAAGTCACATGTGGATCATGGAACATCAACTTTAAGAAAAGTAGTAGATGGGCACGAGAAGGAAAATCAGCTAGCCACATTGCAAACAAGAGATGATGGCAATGATGTTGATGTTGAAGGACTTCTACCTGAGGAAGACACTGCTCCACCAAGTGAAGAAGCTGAGGGTGATTTATTGGATTCAGAGAATTCAGAAGAATTTTGGAAGCCATTTATTGCATCCTCATCAGCTGAGAAGCCAATCAAAGCTAACAATGGTTATGTTCCACGAAAGGAGCAGAAGTCTAATCTTAAGAAAGATGATTCCAAAGACATTGATGAAGCCAGCCTTGTAAACGCGTCCAGTTCTGAACTCAAGTCGTCGAAGTCAGTGAAGAGGAATAAATGGAAACCTGAAGAAATTAAGAAGTTGATCGACATGCGCGGGGAACTACACGATAGATTTCAAGTTGTGAAGGGAAGGATGGCTTTATGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCACTTTGGACATCTTTGGTACAGAAATATCAGGATATTAAGAACAAGGAGGGTAGTAGCAAGAGTAGTTGGCAATATCTTAAGGACATGGAAAGGATAATGCCTGATAGTGAAGCAATGGCAGCAAAATGA 2505 0.4267 MVSSASFASLLLPLYNPAFRPKPTTSLPAFRSIQSSVLPATDGSQAPRKRTRRIEGPRKSMEDSVQRKMEQFYEGKDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGIFLPSRLKIFRTRKKFMAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESSVKDALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIILYSAKEEVLRIVKPQHFLPIHGELLFLKEHELLGKSNGIRHTAVIKNGEMLGVSHLRNRRVLSNGFVSLGRENLQLKYSDGDKAFGTSSDLFIDERLKIALDGIIVVSMEIFRPQRADGLAENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKCPLAHMERTVAEVLRKMVRKYSGKRPEVIAIATENPAAVLAEEINTKLSGKSHVDHGTSTLRKVVDGHEKENQLATLQTRDDGNDVDVEGLLPEEDTAPPSEEAEGDLLDSENSEEFWKPFIASSSAEKPIKANNGYVPRKEQKSNLKKDDSKDIDEASLVNASSSELKSSKSVKRNKWKPEEIKKLIDMRGELHDRFQVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVQKYQDIKNKEGSSKSSWQYLKDMERIMPDSEAMAAK 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc100g00006 834 CDD GT1 740 805 - -
Stsc100g00006 834 MobiDBLite consensus disorder prediction 705 719 - -
Stsc100g00006 834 Gene3D - 742 803 - -
Stsc100g00006 834 ProSiteProfiles Myb-like domain profile. 734 798 IPR001005 -
Stsc100g00006 834 SMART Lactamase_B_5a 93 293 IPR001279 -
Stsc100g00006 834 PANTHER RIBONUCLEASE J 15 408 - -
Stsc100g00006 834 MobiDBLite consensus disorder prediction 695 719 - -
Stsc100g00006 834 Gene3D - 66 301 IPR036866 -
Stsc100g00006 834 Pfam Myb/SANT-like DNA-binding domain 739 824 IPR044822 -
Stsc100g00006 834 Gene3D - 394 470 IPR036866 -
Stsc100g00006 834 SUPERFAMILY Metallo-hydrolase/oxidoreductase 81 453 IPR036866 -
Stsc100g00006 834 MobiDBLite consensus disorder prediction 651 673 - -
Stsc100g00006 834 MobiDBLite consensus disorder prediction 38 66 - -
Stsc100g00006 834 CDD RNaseJ_MBL-fold 84 453 - -
Stsc100g00006 834 MobiDBLite consensus disorder prediction 637 673 - -
Stsc100g00006 834 MobiDBLite consensus disorder prediction 46 66 - -
Stsc100g00006 834 Pfam Beta-lactamase superfamily domain 104 240 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc100g00006 Stsc-Chr100 18297 25273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc100g00006 741 825 Trihelix Transcription Factor Family AT2G38250 34.884 7.79e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc100g00006 Lactamase_B_2 6.5e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc100g00006 - - gmx:100783850 1315.44