Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1009g00002 ATGGAGCCTATGGACATCGTCGGCAAATCGAAGGAAGATGCTTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTGCCTCCTGATGTACGTGTTGCAAGAGACGCTCAAGATCTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTTGTTTCTTCTGAGTCTAATGAAGTTTGTAGCAGAGAGGAAAAACGGACTATTGCACCTGAGCATGTACTGAAGGCTTTAGAGGTTCTCGGCTTTGGTGAGTACATTGAAGAAGTCTATGCAGCATATGAACAGCACAAGCTGGAGACCATGCAGGACTCTTTAAAAGGGGGTGGTAAGTGGAGCAATGGAGCTGAGATGACCGAAGAAGAAGCATTAGCAGAGCAGCAACGGATGTTCGCAGAGGCGCGAGCCAGGATGAACGGCGGCGCCATTGCTTCGAAGCAGCCAGAAGCTGACCAAAGTTTAGATAGCTAA 474 0.4599 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPEADQSLDS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1009g00002 157 PANTHER PROTEIN DR1 HOMOLOG 1 156 IPR044255 -
Stsc1009g00002 157 SUPERFAMILY Histone-fold 12 144 IPR009072 GO:0046982
Stsc1009g00002 157 Gene3D Histone, subunit A 4 144 IPR009072 GO:0046982
Stsc1009g00002 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Stsc1009g00002 157 FunFam Negative cofactor 2 beta 6 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1009g00002 Stsc-Chr1009 7644 10787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1009g00002 1 153 CCAAT-DR1 Transcription Factor Family AT5G23090 83.226 2.61e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc1009g00002 CBFD_NFYB_HMF 5.5e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1009g00002 K21751 - gmx:100807912 304.293