Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc100396g00001 AAAGGGTTTTCAGTGTGGAACGAAGTCGATGCGGGCTTTGATTCTTCGCAAAAAGTTTCACCATCATCAGTAGTATCCAACAACAACAATAACATTGGGAAGGTTATGATGAAACAAGGAGTTTGTAGAGAAGAAGAGAGGAGTAGCAAGAGTAGTACGAAGATGTTGTCAAGGAAGATGATATCTGAGTATTTCTACATGCCAATAACTCAAGCAGCGAAGGAACTTGATGTTGGGTTAACTCTCTTGAAGAAGAGATGCAGAGAGTTAGGGATTAGAAGGTGGCCGCATAGAAAGCTTATGAGCCTTCAAACCCTAATCAATAATGTTCAGGAGCTTGGTAAGGAGGAAGGTGGAGAAAGTGAAGAGAAGCTAAGGAATGCAATTGAGATATTAGAGAAGGAAAAGAAGCTTCTAGAAGAAATGCCTGATATTCAACTTGAAGATAATACCAAGAGGCTTAGACAAGCATGCTTCAAGGCCAATTACAAGAAGAGGAAGCTCATGGCTACTTCTTCTAATAATTCATCCATCCCATCTTCTTCTTCTTCT 552 0.4004 KGFSVWNEVDAGFDSSQKVSPSSVVSNNNNNIGKVMMKQGVCREEERSSKSSTKMLSRKMISEYFYMPITQAAKELDVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKEEGGESEEKLRNAIEILEKEKKLLEEMPDIQLEDNTKRLRQACFKANYKKRKLMATSSNNSSIPSSSSS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc100396g00001 184 Coils Coil 122 142 - -
Stsc100396g00001 184 PANTHER PROTEIN RKD4 29 177 IPR044607 GO:0003700
Stsc100396g00001 184 Pfam RWP-RK domain 56 103 IPR003035 -
Stsc100396g00001 184 ProSiteProfiles RWP-RK domain profile. 38 123 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc100396g00001 Stsc-Chr100396 20 571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc100396g00001 42 167 AtRKD Transcription Factor Family AT1G18790 71.429 5.21e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc100396g00001 RWP-RK 8.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc100396g00001 - - ahf:112774246 243.047