Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1001g00002 ATGACGGGGAAAGTGTGGAAGGCATCATTCGATGCGAAGATGTGGAAGCTCTTGAAGGAGTACAGCCAGGTGGTGGTGGTTACCTCCGACAACGTTGGTTCGAACCAAATCAACCGCATTCGGAGGAGTTTAAAGGGCGAATCCATTGTCGTTATGGGGAAGAACTCCATGATGAAGCGCTCCTTCACTTTCCAAGCTGGAAACAATGCCTTCCTCAACCTTATCCCTCTTTTTAGGGGAAATATAGCGTTGATTTTCACCAAAGGAGATATGAAGGAGGTTAGCGACGAGGTTGCTAAATTGAAGGTACTTATCATATGA 321 0.4611 MTGKVWKASFDAKMWKLLKEYSQVVVVTSDNVGSNQINRIRRSLKGESIVVMGKNSMMKRSFTFQAGNNAFLNLIPLFRGNIALIFTKGDMKEVSDEVAKLKVLII 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1001g00002 106 Pfam Ribosomal protein L10 4 100 IPR001790 -
Stsc1001g00002 106 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 103 - -
Stsc1001g00002 106 Gene3D - 3 104 IPR043141 -
Stsc1001g00002 106 SUPERFAMILY Ribosomal protein L10-like 6 98 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1001g00002 Stsc-Chr1001 4471 5693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1001g00002 10 103 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 60.825 1.60e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1001g00002 K02941 - twl:120015003 132.88