Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3745 ATGGGAGACGGTGGTGTGTCACCGCCTACCTTGTTGGATTTCGATTACATGGATGAACTTTTCTTAAACGGATGCTGGTTGGAAACCTCTACGGATTTCTTTGACCCATGGCCTGCCTTGGACACCAATGAATTCCAGGATGACAAGGTTACTCACTCCGAAATTAACTCTCAACTTGTCAAAAGGTGGTGGATTGCACCCATGCCTACTCCTACTCCTAATCCTGAATCTTCTTCTGTGTTGGAGAGACTAATCAGAGCCCTTGTGTACATCCGGGATTTCAATAGAGACAAGGATATGCTCATACAAATCTGGGTGCCAATTGATAGTGGGGGTAGAAGGATTTTGACCACTAGTGATCTTCCCTTCTCCCTTGAAACCACCCGTTCAAATCTTGCCAAGTACCGAGAAATCTCTGTCAAATTTCATTTCTCAGCTGAGGACGACTCTAAGGGCAAGGGGCTCATGCCAGGATTGCCTGGTAGAGTTTTTACAGACAAGGTTCCTGAGTGGACTCCTGATGTTCGTTTCTTCGCAAGTGATGAGTACCCTCGAGTTGACCATGCTCAACAGTACGATGTACGTGGAACTTTAGCCCTTCCAATCTTTGAGCAAGGCAGCAACACTTGCTTGGGTGTTATTGAGGTTGTCATGACTAAGCAGCAGATCAAGTATTTCCCCGAACTTGAAAGTGTCTGCAAAGCACTTGAGGCTGTTGATCTCAGAAGCTCAAAACTTTCAAGTCTGCAGAATTTGAAGGCATGCAACAATTCCTATGAAGCTGCACTACCTGAGATTCAAGAGGTATTGAGATCTGCATGTGAAATGCACAGATTGCCTTTAGCCCAAACTTGGGTCCCGTGCATCCAACAAGGCAAAGAGGGGTGCCGCCACTCAGATGATAATTATCTACATTGTATATCACCTGTGGAGCATGCTTGCTATATAGGTGATCCATGCGTCCGGGTTTTTCATGAGGCCTGCTCTGAGCATCACTTGTTGAAAGGTCAAGGTGTTGCTGGTGGAGCTTTTATGACCAATCAACCTTGCTTCTCAGCTGACATAACTTCCTTAAGCAAGAGAGACTATCCACTATCTCACCATGCAAGAATTTTTGGATTGCGAGCCGCTGTTGCTATACGCCTGCGAAGCATCTATAGCAGCACGGATGACTTTGTCCTGGAGTTCTTCTTGCCTGTAAACTGTACTGATAGTGAACAACAGAAGAAGATGCTTACTTCATTGTCCATGATTATACAACGGGTTTGCCATAGCTTGCGGGTCATTACAGATAAAGAACTGGAGGAGGAAACCAGCTTATCAATTGATGAAGTGATAGTCTCTGCAGATAGGATGGAGCTCCAACAGAGTGGAACGGTTGCCTCATTGGGCACCAAAGACAAGTCAAGTGAAGCAGTGAATAGACAGTTTCCTGACTCTATTTTAAAAGCAAACCTTGACTATGTTGGGGAGGGTGGCTTACCCATTGTTGGTACAAGTAAAACGGGAGATAAAAGACGGACCAAAGCAGAGAAAACTATCACCTTGCAAGTTCTTCGGCAATATTTTGCTGGAAGCCTCAAAGATGCGGCAAAGAATATTGGTGTATGTACTACAACTTTGAAAAGAATCTGCCGCCAACACGGGATAAAGCGCTGGCCTTCTCGGAAAATAAAAAAGGTTGGTCACTCCTTGCAGAAACTTCAACTTGTGATCGACTCAGTTCAAGGTGCCTCTAGTGCTTTCCAAATAGATTCCTTCTACTCCAAGTTTCCGGAACTAGCCTCCCCAAGCAGCATGTTGTCAACCGGTAAGCAAAGTGATAGTCCAGATCCATCAAGCATGCGCTTGGTGAGCCCAGAAGCACCCTCGTCTTCGGGCAGCCAGAGTTCCAGCTCAAGCCATTCCTGTTCTAGCATGTCTGTTGGTGTTAGGGTTGGAGTTGGAGAAGATGGTTCTAATGGGTTGTTGAAGAGGATCAGAAGTGAAGCAGAGCTAAAAAGCTTTAGTCAAGATAGAGCAGAGCTCTTGCCCAGATCCCAAAGCCAGGAAACACTCGGTGAACATCCAAAAATTGTGTTGAAAAGCAATCACAAAGCACCTCAAAAGGAGGATGGTCAGAGAGTAAAAGTGACGTTTAGAGATGAGAAAGCCCGGTTTCGGATGCCTAAGACTTGGGGTTATGAAGATCTATTGCGGGAAATTGCTAGGCGATTTACCATAGATGACATGAGCAAGTTGGATGTCAAGTATCTAGACGATGATTCTGAGTGGGTATTACTAACTTGTGATGCTGATTTAGAGGAGTGCGTTGATGTTTGTGAGTCATCTCAGAGCAGTACCATCAAACTTTGCCTCCAAGTTTCCAGAAGTCTAGGGAATAAGCATTATGATCATAGAGAGGAGTCAGGAAATTTGCATTGGGAAGCAGTGGCAGATGAGTCAGCTCACGAAGCTGAAATAGAAATAGTAATGGAGGAAGCCAATGCCATGGCAAATTCAGGAAAGCACATAGAATTGCTACTTGCTAGAGGATAG 2538 0.4507 MGDGGVSPPTLLDFDYMDELFLNGCWLETSTDFFDPWPALDTNEFQDDKVTHSEINSQLVKRWWIAPMPTPTPNPESSSVLERLIRALVYIRDFNRDKDMLIQIWVPIDSGGRRILTTSDLPFSLETTRSNLAKYREISVKFHFSAEDDSKGKGLMPGLPGRVFTDKVPEWTPDVRFFASDEYPRVDHAQQYDVRGTLALPIFEQGSNTCLGVIEVVMTKQQIKYFPELESVCKALEAVDLRSSKLSSLQNLKACNNSYEAALPEIQEVLRSACEMHRLPLAQTWVPCIQQGKEGCRHSDDNYLHCISPVEHACYIGDPCVRVFHEACSEHHLLKGQGVAGGAFMTNQPCFSADITSLSKRDYPLSHHARIFGLRAAVAIRLRSIYSSTDDFVLEFFLPVNCTDSEQQKKMLTSLSMIIQRVCHSLRVITDKELEEETSLSIDEVIVSADRMELQQSGTVASLGTKDKSSEAVNRQFPDSILKANLDYVGEGGLPIVGTSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPSSMLSTGKQSDSPDPSSMRLVSPEAPSSSGSQSSSSSHSCSSMSVGVRVGVGEDGSNGLLKRIRSEAELKSFSQDRAELLPRSQSQETLGEHPKIVLKSNHKAPQKEDGQRVKVTFRDEKARFRMPKTWGYEDLLREIARRFTIDDMSKLDVKYLDDDSEWVLLTCDADLEECVDVCESSQSSTIKLCLQVSRSLGNKHYDHREESGNLHWEAVADESAHEAEIEIVMEEANAMANSGKHIELLLARG 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3745 845 Pfam RWP-RK domain 513 561 IPR003035 -
Sto9g3745 845 SMART PB1_new 706 789 IPR000270 GO:0005515
Sto9g3745 845 Pfam PB1 domain 708 788 IPR000270 GO:0005515
Sto9g3745 845 ProSiteProfiles PB1 domain profile. 706 789 IPR000270 GO:0005515
Sto9g3745 845 SUPERFAMILY CAD & PB1 domains 700 789 - -
Sto9g3745 845 PANTHER PROTEIN NLP4 48 794 - -
Sto9g3745 845 PANTHER PROTEIN NLP8 48 794 IPR045012 GO:0003700
Sto9g3745 845 Gene3D - 707 788 - -
Sto9g3745 845 MobiDBLite consensus disorder prediction 595 645 - -
Sto9g3745 845 ProSiteProfiles RWP-RK domain profile. 500 581 IPR003035 -
Sto9g3745 845 MobiDBLite consensus disorder prediction 595 641 - -
Sto9g3745 845 CDD PB1_NLP 708 787 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3745 Sto-Chr9 35609846 35613216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3745 11 789 NLP Transcription Factor Family AT1G20640 50.718 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sto9g3745 PB1 3.1e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3745 - - gmx:100790922 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3745 9 35609846 35613216 Sto9g3745 9 35609846 35613216 ECH