Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3724 ATGCTTGATTCCGTTCTCCTGGCACTCTTCCTGCCTTGCCTGGGCATGAGCGCCGTCTTCATCGTCTACATGTGCCTTCTCTGGTACGCCACTACCCATCACCCCAATACTGTTGCGCTACCCGCCAAGGCCCCCTCCGACAAGGGCCTCTCCGCTTCCGACCTCCAGAAGCTCCCCAGAATCACCGGAAAGGAACTCGTGATGGGGAGTGAATGTGCGGTTTGCCTTGACGACATCCACAACGACCAACCCGCCCGACTGGTTCCCGGTTGTAACCACGCCTTCCATTTGGAATGCGCTGATACTTGGCTTTCCAACCACCCTCTCTGTCCGGTTTGTAGAGCCAACCTCCATCCTCACCTTTTCGATTCCCCTCACAATCCATGCTAG 390 0.5667 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHHPNTVALPAKAPSDKGLSASDLQKLPRITGKELVMGSECAVCLDDIHNDQPARLVPGCNHAFHLECADTWLSNHPLCPVCRANLHPHLFDSPHNPC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3724 129 SMART ring_2 72 113 IPR001841 -
Sto9g3724 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 120 IPR013083 -
Sto9g3724 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 129 - -
Sto9g3724 129 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 129 - -
Sto9g3724 129 SUPERFAMILY RING/U-box 71 120 - -
Sto9g3724 129 Pfam Ring finger domain 71 114 IPR001841 -
Sto9g3724 129 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3724 Sto-Chr9 35508520 35508909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3724 1 121 C3H Transcription Factor Family AT5G42200 53.175 4.36e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3724 K19037 - gmx:100817919 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0098 5 597808 598206 Sto9g3724 9 35508520 35508909 CCT
Sto9g3724 9 35508520 35508909 Sto9g3724 9 35508520 35508909 ECH