Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3698 ATGTCACAAATTAGTGAAACTACTACTCCAAAGTTTGACTCTAGACTCACTTCCGAAGGATGCAGTGTCTTGCTGGACATCAACGACGCTGACCGTCTCGTTTTTGCTCGTCTTTCCGCTTCTGCGAAATTGAAAATTGGGAATAAAAACTGCTCTCTCCAGCCATTAATTGGATGTCCATATGGTTCTCTTTTTCAAGTTGACTCTGCACCTGGCGGACCTTATTTATCTCGCATTTTTCCTTCCTCCCAAGGTAATGATACTGAAGAGAGAAGAGATAGTCAATTAAATGTTGAGTCCAGGGACAATCGGACATTGATTGACAATAACAAGGCCCAAAACCTGACTGGTGAAGATATAGAAGCTATGCAGAGGATGGGTGCCAAAGGCGATGAAATTATTGAAGCACTCATTGCTAATAGTGCAACATTTGAAAAGAAAACAACTTTTTCACAGGAGAAATATAGACTTAGGAAGCAAAAGAAATATGCACCAAAGGTACTTCTTAGGCGTCCTGTTGCTCGAAGGTTCTTGCGGGTTGATACGTTATCACTTTTACTTTCCATGGCTAATGTCTCTTCAAACTCAGACATTCTCGTGGTCGATATGGTTGGTGGCCTTCTTACCGGTGCTCTGGCAGAACGTTTAGGAGGTACTGGTTTTGTATGCAACTCATATTTAGGATCAGCACCATATTCCATGGATATTGTGAGGATATTTAACTTTAGCGATGAAATTTGCAAGAGGATTGTTCGGTCTCCCATTTCTGATTTGCTGTCACAAAAAGAGTCACCTGAGCAAATTCTACAACGTGATGATGTCTGCAACATGGAAAGCCAATCAAATAGTCAAGTATGTACGTCAGTCAGCATGGATGAAACCTCTTCTTCATCAGGAAATGGAACTTCTGATCTGAGTGCTGAGGGTATTGAGACTACCATCATTCCTCCTGTAAGAGCTTGCAAATCTATAAAGGCCGGAGAAAAGGCACAACAAGAAACCATTGACTTGTGGAAGGAAAATGGTTTTTCAAGCCTAGTTATTGCTGCGCCAGATTTGGATACTTGGACATTGGTTAGAGATCTCTTGCCCCTCTTATCAAATTCAGCTCCCTTTGCTATTTATCATCAATATCTTCAGCCTCTTGCAACTTGCATGCACAATCTACAGCTTGGGAAAATGGCCATTGGCATGCAAATATCAGAGCCTTGGTTGCGTGAATACCAGTTGAGTCAAAGATATGGAATTGACAGTCCCAAGTTTCAGACAAGTAATATTGAAGTAGCTCCAAGTCTGGACAAAGTAGTTAATCTTTCTTCACTTGAAGGTGGGCCGGGCATAAGTGGAAAACACTATGGTAAATCGAAAGTTTCAAGAAATGTGAAATCAGGAATTCAAAGATCAAATACTGGGTCTCCTAATTCAACTCCAGTTAACAACTGCCGATATGACAGTTCATTAGGATTGTTAACCAAGAAGTTTGTCAGTTTAATTCAGGAGGCTAAGGATGGTACCCTGGATCTAAATAAAACCGCTGAGATTTTGGAGGTTCAGAAAAGGAGAATTTATGATATCACAAATGTTCTTGAAGGAATAGGATTGATagaaaaaacttcaaaaaaCCATATAAGATGGAAGGGATATGACGGGCTGGGGCCAAGCGAGCTAGACGATCAAGTTACTAGACTAAAGGCTGAGGTTGAAACTCTATATTCAGAGGAATGTCAACTTAATGATCTTATAAGGAAAACGCAAGAGCTTTTAAGAACTTTGGAGGAAAAAGAAAACTATCCGAAGTATCTTTTTTTGACTGAGGAAGATGTTCTTAGCCTTCCATGCTTCCAGAATCAAACACTTATTGCAATCAAGGCTCCACCAGCTAGTTACGTTGAAATTCCTGATCCTGATGAGGATAATGGTTTCGAGCAAAGGCAGTACACAATGATTGTTAGAAGCACCACTGGACCAATAGATTTGTATCTCTTGAGCAAACACAATCCCAGTTATGAGGACGTTAGTGTCAGGCAAGCTAGTCTAAAAGATCCTTCAAGGAACAGTGACCATTGTGGATTGAAAAGTGCGGGATTGCTTTTACAAGGCAAAGGCGCTCAGAAAAATCCTTTTCAAAATTTTAGTTCGCTGGACAGAGAGGCATCTGGCATTCAGAAAATTACTCCTACCGATTTTGACaTTGAAGATGACTATTGGTTCCAATCAGATCATGGAGTGGCCCTAACGGATTTGTGGGCAAACGAGCCGTTAGTTGAGATAGATGAGCTCCTTCAAGACAATTATCCCGATGAAGGTGGGATTATCACTCACACACCAGCATCACAGACAGATGTTGTTAATATTCTTCCCCGTGTAACCCTTATGCTCTCTTCCATCACTGTCTCTTTTGGGGGAGGGTTCCCATTTTCATTtgttgaagatgatgaagatgacgcTGCTGCTTCAATTTGCATGGGTTCTGCCTCTGCTGGTGCAGATTGGCTGGGGGTTTCAACTGACGGATTAGATTTCTGA 2526 0.407 MSQISETTTPKFDSRLTSEGCSVLLDINDADRLVFARLSASAKLKIGNKNCSLQPLIGCPYGSLFQVDSAPGGPYLSRIFPSSQGNDTEERRDSQLNVESRDNRTLIDNNKAQNLTGEDIEAMQRMGAKGDEIIEALIANSATFEKKTTFSQEKYRLRKQKKYAPKVLLRRPVARRFLRVDTLSLLLSMANVSSNSDILVVDMVGGLLTGALAERLGGTGFVCNSYLGSAPYSMDIVRIFNFSDEICKRIVRSPISDLLSQKESPEQILQRDDVCNMESQSNSQVCTSVSMDETSSSSGNGTSDLSAEGIETTIIPPVRACKSIKAGEKAQQETIDLWKENGFSSLVIAAPDLDTWTLVRDLLPLLSNSAPFAIYHQYLQPLATCMHNLQLGKMAIGMQISEPWLREYQLSQRYGIDSPKFQTSNIEVAPSLDKVVNLSSLEGGPGISGKHYGKSKVSRNVKSGIQRSNTGSPNSTPVNNCRYDSSLGLLTKKFVSLIQEAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGYDGLGPSELDDQVTRLKAEVETLYSEECQLNDLIRKTQELLRTLEEKENYPKYLFLTEEDVLSLPCFQNQTLIAIKAPPASYVEIPDPDEDNGFEQRQYTMIVRSTTGPIDLYLLSKHNPSYEDVSVRQASLKDPSRNSDHCGLKSAGLLLQGKGAQKNPFQNFSSLDREASGIQKITPTDFDIEDDYWFQSDHGVALTDLWANEPLVEIDELLQDNYPDEGGIITHTPASQTDVVNILPRVTLMLSSITVSFGGGFPFSFVEDDEDDAAASICMGSASAGADWLGVSTDGLDF 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3698 841 Pfam Gcd10p family 22 260 IPR017423 GO:0030488|GO:0031515
Sto9g3698 841 SUPERFAMILY "Winged helix" DNA-binding domain 482 545 IPR036390 -
Sto9g3698 841 Gene3D - 476 549 IPR036388 -
Sto9g3698 841 PANTHER TRANSCRIPTION FACTOR E2F 399 752 IPR015633 GO:0000978|GO:0006357
Sto9g3698 841 Coils Coil 577 597 - -
Sto9g3698 841 Pfam E2F transcription factor CC-MB domain 563 662 IPR032198 GO:0046983
Sto9g3698 841 SMART E2F_TDP_2 482 547 IPR003316 GO:0005667|GO:0006355
Sto9g3698 841 PANTHER TRANSCRIPTION FACTOR E2FC 399 752 - -
Sto9g3698 841 Pfam E2F/DP family winged-helix DNA-binding domain 484 547 IPR003316 GO:0005667|GO:0006355
Sto9g3698 841 SUPERFAMILY E2F-DP heterodimerization region 558 664 IPR037241 -
Sto9g3698 841 MobiDBLite consensus disorder prediction 286 306 - -
Sto9g3698 841 Gene3D - 553 665 - -
Sto9g3698 841 CDD E2F_DD 558 665 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3698 Sto-Chr9 35319733 35335052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3698 424 751 E2F-DP Transcription Factor Family AT1G47870 52.096 5.24e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sto9g3698 Gcd10p 3.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3698 K03256 - gmx:100783601 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3698 9 35319733 35335052 Sto9g3698 9 35319733 35335052 ECH