Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3676 ATGGCATCAACGGCTATTTTTTTCTGCTTCCTCCTCGCATTGACTTCCTTCTTATCACGTGCCCACTCCTCCATGTCCGAGATCCAAGCCTTAATCTCCTTCAAGCTCAGCCTCCACGATCCTCTCGCTTCCCTTGACGCTTGGGATTCCTCCACACCATCCGCTCCATGCGACTGGCGTGGCATTGTGTGCTTCAACAACCGAGTTCGTGAGCTTCGTTTGCCTCGTCTTCAACTCGCCGGTCCACTCTCTGACTCCCTCTCCCATTTGGTTCAACTCCGCAAGTTAAGCCTCCATTCTAACAACTTCAATGGCTCTATACCTCCTTCTCTTTCTCACTGCTTGCTTCTGCGTTCCGTTTACCTTCATAATAATTCACTTTCCGGCAAACTCCCCCCGCCTCTCCTCAACCTTACCAACCTCCAAATTCTCAACGTCGCTCGCAACCTTCTCTCCGGCAGCATCTCCGGCGACATAACCAACTCTCTCCGCTTCCTCGATTTATCGTCCAACGCATTCTCTGGCGATATTCCGTCGAATTTTTCCTCAAAATCTCAGCTGCAGCTCATCAATTTGTCTTACAATCAGTTCTCCGGTGGAATTCCGGTGAGTATTGGAGTTTTGGGACAGCTTGAGTATCTCTGGCTAGACTCCAACCAATTGTATGGGACTCTTCCTTCGGCTCTGGCGAACTGTTCTTCTCTTGTGCATTTAAGCGCCGAAAACAATGCGCTCACTGGTTTGATTCCGGCGACCATCGGGACAATGCCCAAGCTTCAGGTGCTATCGTTGTCGTCCAATCAACTCTCTGGATCGGTCCCCACTTCTCTGTTTTGCAATGTCCACTTGGCTAATTCTTCTTCTCTCAGAATTGTTCAATTAGGCTTCAATGCGCTCACGGGCATTTCCAAGCCGCCAAAAGCAGGTTGCGTTAATGCTTTGGAGATTTTGGAGCTTAAGGAGAATTATATTCGCAGTGCATTTCCCTCCTGGCTGACTAATGCGACGTCGTTAAGAGCTGTGGATCTTTCCGGAAACTACTTCTCGGGTATTTTGCCGGCGGATGTTGGGAATTTATTAAGGCTAGAGGAGTTGAGGCTGCCAAGTAATTCATTATCTGGTGGAGTTCCTCCTGATATTATCAAATGCATTTTCTTGCAGGTTCTTGATCTTCAAGGGAACAAATTCTCTGGTTCCGTTCCTTCATTTCTTGGTCAACTCAAGAAGCTCAAGGTGTTATCTCTTGCCCATAACCTCTTCACTGGTTCTATACCCACGAGTTTTGGAACACTTTCCGAGCTGGAGTCGTTGAATTTGAGCAATAACAATCTAACAGGGGATATACCCCAAGAGTTAATGCGACTGAGCAACATGAGTGCTTTGAATCTCAGTAACAACAGATTTTCAGGCCAAGTTTCGTCCGACATAGGGGACTTAATAGCTTTGCAGATTCTGAACCTGAGTCATTGTGGGTTTTCAGGACGGATTCCTGCTAGTGTTGGTAGTTTGATGAAGCTTACGGTGCTTGATTTAAGTAGGCAGAATCTTTCTGGTGACTTGCCTATTGAGCTTTTTGGATTACCAAGCCTGCAGGTTGTAGCTCTTCAAGAGAACCACTTGTCTGGATCTGTTCCCGAAGGTTTCAGCAGTTTAGTTAGTCTACAGTATCTTAATCTCAGCTTCAATGTCTTTGCTGGTGCCATTCCAACAACTTACGGATTCCTTCGCTCCTTATCTGTTCTGTCTATATCTCACAATCGAATTTCTGCTAGTATACCCTCTGACATTTCTAACTGTTCTCAACTTGAAGTGCTCGAGCTTCATATCTACCGCCTCAATCGTTTAAAGCTCCTTAATTTGGGAGATAACATGTTAACAGGAGATATTCCAGAAGAATTATCACAATGTTCTGCTTTGACATCACTCTTGTTGGATGCTAATAACTTAACGGGTCAAATTCCAGGATCCTTGTCAAATTTATCAAACTTGACTGCGTTGAATCTCTCTTCAAATCAATTGAGTGGACAAATCCCGGCCAACCTGTCACGAATTTCTGGTTTGAAGTATTTAAATCTATCTAGAAATAATCTTGAAGGCGAGATTCCTGAAATGCTAGGCTCGCGATTCAATGATCCCTCAGTATTTGCAATGAACCAGAGGTTATGCGGAAACCCACTGCACAGAGAATGTGGAAACGTAAGAAGGCGAAGGAGGAAGAGGGTGATAATATTCACAGGCGTGGCTCTGGCTGGACTATGCCTTTTGGCACTATGTTGCTGTGGCTACATTTACAGCCTCTTAAGGTGGCGCAAGAAGCTTCGAGAAGGAGTAACAGGGGAGAAGAAGAGGAGCCCTACTAGTGGTAGCTCAGGAGGTCGAGGGAGTGGGGAAAATGGTGGGCCAAAGCTAGTGATGTTTAATAACAAGATTACGTATGCTGAGACATTAGAAGCAACAAGACAATTTGATGAAGAGAATGTATTAAGCAGAGGAAGATACGGTCTTGTGTTCAAAGCCTCGTACCAAGATGGGATGGTGCTCTCAATCCGTCGTCTGCCAGATGGATTCATGGAGGAGGGAACGTTCCGTAAAGAAGCAGAATCACTGGGAAAAGTAAAGCATCGAAATTTAACAGTGTTGCGTGGCTATTATGCAGGCCCACCTGATGTGAGGCTGCTTGTTTATGACTACATGCCCAATGGAAACTTGGGGACTCTGCTTCAAGAGGCATCTCAGCAAGACGGGCATGTGCTAAATTGGCCAATGCGTCATCTCATCGCACTGGGCATTGCTCGCGGGCTAGCTTTCTTGCACTCAGTCTCAATAGTTCACGGGGATGTGAAGCCCCAAAATGTTCTATTTGATGCTGATTTTGAAGCTCATTTGTCAGAATTTGGGTTGGATCGAATAACGATGGCAACCCCAGCAGAAGCATCGTCATCTTCGACTCCAATAGGATCATTGGGTTATGTATCACCAGAAGCAGCATTGACGGGGCAAGCGACGAAGGAGGCAGATGTGTACAGCTTTGGGATAGTATTGTTGGAGATACTTACAGGGAGGAAACCAGTGATGTTTACGCAAGATGAAGACATAGTGAAGTGGGTGAAAAGACAACTGCAAAGAGGCCAAATTTCAGAATTGCTGGAGCCTGGTTTGCTTGAGCTTGATCCTGAATCATCAGAATGGGAAGAGTTCTTGTTGGGCATCAAAGTAGCTCTTCTATGCACCGCACCTGATCCTCTTGATCGACCATCCATGACTGACATTGTTTTCATGCTCGAAGGTTGCCGAGTCGGACCGGAGATTCCATCCTCCGCCGATCCCACAACGCTGCCTTCTCCGGCTTGA 3351 0.462 MASTAIFFCFLLALTSFLSRAHSSMSEIQALISFKLSLHDPLASLDAWDSSTPSAPCDWRGIVCFNNRVRELRLPRLQLAGPLSDSLSHLVQLRKLSLHSNNFNGSIPPSLSHCLLLRSVYLHNNSLSGKLPPPLLNLTNLQILNVARNLLSGSISGDITNSLRFLDLSSNAFSGDIPSNFSSKSQLQLINLSYNQFSGGIPVSIGVLGQLEYLWLDSNQLYGTLPSALANCSSLVHLSAENNALTGLIPATIGTMPKLQVLSLSSNQLSGSVPTSLFCNVHLANSSSLRIVQLGFNALTGISKPPKAGCVNALEILELKENYIRSAFPSWLTNATSLRAVDLSGNYFSGILPADVGNLLRLEELRLPSNSLSGGVPPDIIKCIFLQVLDLQGNKFSGSVPSFLGQLKKLKVLSLAHNLFTGSIPTSFGTLSELESLNLSNNNLTGDIPQELMRLSNMSALNLSNNRFSGQVSSDIGDLIALQILNLSHCGFSGRIPASVGSLMKLTVLDLSRQNLSGDLPIELFGLPSLQVVALQENHLSGSVPEGFSSLVSLQYLNLSFNVFAGAIPTTYGFLRSLSVLSISHNRISASIPSDISNCSQLEVLELHIYRLNRLKLLNLGDNMLTGDIPEELSQCSALTSLLLDANNLTGQIPGSLSNLSNLTALNLSSNQLSGQIPANLSRISGLKYLNLSRNNLEGEIPEMLGSRFNDPSVFAMNQRLCGNPLHRECGNVRRRRRKRVIIFTGVALAGLCLLALCCCGYIYSLLRWRKKLREGVTGEKKRSPTSGSSGGRGSGENGGPKLVMFNNKITYAETLEATRQFDEENVLSRGRYGLVFKASYQDGMVLSIRRLPDGFMEEGTFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVSIVHGDVKPQNVLFDADFEAHLSEFGLDRITMATPAEASSSSTPIGSLGYVSPEAALTGQATKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVALLCTAPDPLDRPSMTDIVFMLEGCRVGPEIPSSADPTTLPSPA 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3676 1116 Pfam Leucine rich repeat 162 221 IPR001611 GO:0005515
Sto9g3676 1116 Pfam Leucine rich repeat 638 697 IPR001611 GO:0005515
Sto9g3676 1116 Pfam Leucine rich repeat 505 562 IPR001611 GO:0005515
Sto9g3676 1116 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Sto9g3676 1116 ProSiteProfiles Leucine-rich repeat profile. 433 456 IPR001611 GO:0005515
Sto9g3676 1116 Gene3D Ribonuclease Inhibitor 24 173 IPR032675 -
Sto9g3676 1116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672|GO:0006468
Sto9g3676 1116 ProSiteProfiles Protein kinase domain profile. 822 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g3676 1116 SUPERFAMILY Protein kinase-like (PK-like) 801 1105 IPR011009 -
Sto9g3676 1116 SMART serkin_6 822 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g3676 1116 Gene3D Transferase(Phosphotransferase) domain 1 898 1102 - -
Sto9g3676 1116 Pfam Protein tyrosine and serine/threonine kinase 825 1041 IPR001245 GO:0004672|GO:0006468
Sto9g3676 1116 MobiDBLite consensus disorder prediction 777 802 - -
Sto9g3676 1116 Gene3D Phosphorylase Kinase; domain 1 800 897 - -
Sto9g3676 1116 PRINTS Leucine-rich repeat signature 434 447 - -
Sto9g3676 1116 PRINTS Leucine-rich repeat signature 660 673 - -
Sto9g3676 1116 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1112 - -
Sto9g3676 1116 Gene3D Ribonuclease Inhibitor 281 465 IPR032675 -
Sto9g3676 1116 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Sto9g3676 1116 SMART LRR_typ_2 479 503 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 208 232 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 527 550 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 612 636 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 660 684 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 551 574 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 138 162 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 90 114 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 359 383 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 431 455 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 575 599 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 407 430 IPR003591 -
Sto9g3676 1116 SMART LRR_typ_2 256 280 IPR003591 -
Sto9g3676 1116 Gene3D Ribonuclease Inhibitor 466 738 IPR032675 -
Sto9g3676 1116 SUPERFAMILY L domain-like 609 722 - -
Sto9g3676 1116 Pfam Leucine Rich Repeat 482 503 IPR001611 GO:0005515
Sto9g3676 1116 Gene3D Ribonuclease Inhibitor 175 280 IPR032675 -
Sto9g3676 1116 SUPERFAMILY L domain-like 279 608 - -
Sto9g3676 1116 SUPERFAMILY L domain-like 24 350 - -
Sto9g3676 1116 PANTHER LRR RECEPTOR-LIKE KINASE 4 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3676 Sto-Chr9 35156305 35159688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3676 1 1116 Receptor kinase-like Gene Family AT1G75640 64.675 0.0 1370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Sto9g3676 PK_Tyr_Ser-Thr 2.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3676 - - jre:108991311 1630.15