Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3671 atggcTCGAGGTAAGATCCAGATCAAGAGGATAGAGAACACCACCAATCGCCAGGTCACCTACTCCAAAAGACGAAACGGTCTCTTCAAGAAGGCCAATGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCCATTATTATGTTCTCCAGCAGCACTGGCAAACTCCATGAGTACATTAGCCCCTCCATCACAACAAAGGAGTTCTTCGATCTGTACCAAAAGACTGTAGGGACTGATCTATGGAGCTCCCACTATGAGAATATGCAAGAGAACTTGAGGAAGCTGAAAGAGGTGAACAGGAATCTTCGCAGAGAGATTAGgcAGAGGATGGGGGACTGTTTGAATGATCTCAGCCTGGAGGAACTGAGGCTACTTGAGGCTGAAATGGATCAGGCCACCAAAGTCATTCGTGAGCGCAAGTTAAAGGTGATATCAAATCAGATTGACACTCAAAGGAAAAAGTACAACAACGAGAAAGAAGTGCACGGCAGACTCCTACGTGATTTAGAAGCAAGAGCGGCAGATCCACGTTTTGGATTAGTAGATAATGGAGTGGAGTATGATTCTGTGATCGGATTCTCCAATATAGGTCCTCGCATGTTTGCATTAAGCCTGCAGCCTAGCCATCCCCATGCCGGAGCGGAAGGCTCAGATCTTACCACTTATCCTTTACTTTTCTAG 681 0.4596 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSSTGKLHEYISPSITTKEFFDLYQKTVGTDLWSSHYENMQENLRKLKEVNRNLRREIRQRMGDCLNDLSLEELRLLEAEMDQATKVIRERKLKVISNQIDTQRKKYNNEKEVHGRLLRDLEARAADPRFGLVDNGVEYDSVIGFSNIGPRMFALSLQPSHPHAGAEGSDLTTYPLLF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3671 226 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Sto9g3671 226 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Sto9g3671 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 58 IPR002100 GO:0003677|GO:0046983
Sto9g3671 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Sto9g3671 226 CDD MADS_MEF2_like 2 81 IPR033896 GO:0000977|GO:0045944
Sto9g3671 226 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto9g3671 226 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto9g3671 226 ProSiteProfiles MADS-box domain profile. 1 62 IPR002100 GO:0003677|GO:0046983
Sto9g3671 226 Coils Coil 115 142 - -
Sto9g3671 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto9g3671 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto9g3671 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto9g3671 226 Coils Coil 152 172 - -
Sto9g3671 226 Coils Coil 85 112 - -
Sto9g3671 226 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Sto9g3671 226 PANTHER APETALA3 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3671 Sto-Chr9 35135504 35138080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3671 1 225 MADS-box Gene Family AT3G54340 58.190 5.11e-94 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto9g3671 K-box 4.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3671 K09264 - gmx:547720 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3671 9 35135504 35138080 Sto9g3671 9 35135504 35138080 ECH