Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3668 ATGAACACGCTTCTGGTATGGTGGCACCCCCCAGTGGCCCCACTTGTTCCATGTAGACAACACAGGAATGGGGGCCATTCTCCCCACCTTCTGCTTTTGGGTGCAACAAATGGCGGGTTTGTTCTCTCTAGGGAGGAGGAGATCTACAGCAGCGACAACAAAGGATTCGAGATATGGACACAGTCTTGTCATCCACACCAACACTTGAACAGCAGCTTCTCTCTTGGGGTGGGTCCTAGTCCTAGTAGATTTGGATTGACGGTGATGAGGTCTGGAGGAGGAGGCATCAACTGTCAGGACTGTGGGAACCAAGCCAAGAAGGACTGTGCACATCTTAGATGCAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCAGCATCCAAACGCCGCGAACGACAACACCAGCTActgcaacaacaacaacatcaTACCTCTAAACGAATTAGAGATACTCACGCTACTGCACCCTGCATTCCTTCACCCATCACCACCACAGggTTGGAAGTGGGACAATTCCCAGCGGAAGTGAAGTCTGCAGCAGTATTTCAGTGTGTGAGAGTGAACGCAATGGACAGTCCTGAAGAGCAGTACGCGTATCAGACGGCTGTGAACATCGGAGGGCATGTATTCAAGGGAATTCTGTATGATCAAGGCCCAGGCCCAGGCCCTGAAATCAATATTGATGGTGGTGCTACTGCTACTCAAAGCCAAAGGTGTTCCTCCGCTGGAGCTGAACCACGGCCTCAACAATTCAATCTCATAACCGCCTCAACCACCAGCTCCAACCCATTTGATCCTTCACTCTTCCCCCTCCCACTCCCACTCAACACTTTCATGCCTGGTACGCAATTCTTCCCACCACCAAGATCCTAG 903 0.5039 MNTLLVWWHPPVAPLVPCRQHRNGGHSPHLLLLGATNGGFVLSREEEIYSSDNKGFEIWTQSCHPHQHLNSSFSLGVGPSPSRFGLTVMRSGGGGINCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPASKRRERQHQLLQQQQHHTSKRIRDTHATAPCIPSPITTTGLEVGQFPAEVKSAAVFQCVRVNAMDSPEEQYAYQTAVNIGGHVFKGILYDQGPGPGPEINIDGGATATQSQRCSSAGAEPRPQQFNLITASTTSSNPFDPSLFPLPLPLNTFMPGTQFFPPPRS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3668 300 Pfam Domain of unknown function (DUF702) 95 229 - -
Sto9g3668 300 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 181 229 IPR006511 -
Sto9g3668 300 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 40 298 IPR007818 GO:0003700|GO:0006355
Sto9g3668 300 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 97 139 IPR006510 -
Sto9g3668 300 PANTHER PROTEIN SHI RELATED SEQUENCE 7 40 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3668 Sto-Chr9 35126485 35129316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3668 71 295 C2H2 Transcription Factor Family AT5G66350 45.489 4.47e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sto9g3668 DUF702 7e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3668 - - aip:110264314 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0175 5 1037615 1039630 Sto9g3668 9 35126485 35129316 CCT
Sto9g3668 9 35126485 35129316 Sto2g0784 2 6705915 6706689 ECH
Sto9g3668 9 35126485 35129316 Sto9g3668 9 35126485 35129316 ECH