Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3658 ATGCCCAACTCCATTAGAGGCAGAGATCAATTTGGCAATCTAGATTTCGatgcttgtggttcttctttAAGAAGCATGAATGTATTTCCTGAGGCATTCCCCAGCATTCACTCTGTGTCTATTGGAGACAGAATTTCAAGACCAGAGGACCTCGTGCAAGCTCTTGCACTAGCAGAGGGCTCTGAGTCTGAGATTAATCACACTACACATTTGATGAATCTTCTAGAGAGAAATCACCCACCTCACTGTCCTTCCTCCTCTTATGGAACACAATCTTCTGCTGCTTCTATCATTGCCAACTCAACATACTTAAAACCACTACAATCCCTTCTTCAAGAATTTGTTGATGTTGGTGGAATTGTCAATGACGAATGTGTGGACCAGTTATTTCGTGGGAGTGGAATAGGAGCCTCAAGACTCTCCTCAGAGTTAAAAGCAAAGCTGTGCAATAATGAGCTATTATTGGTTGAGAAACATGAACTTGTGATGAAAATAGCAAAGCTGATTGATTTGCTGGATGAGgtaGAGGGGAGATATGAGAAATACTACCATGAACTGGAAGAAGCAGTGTCATCCTTCGAGATGATAACAGGTGTAGGAGCTGCCAAGTGTTATACTGATTTAGCCCTCATGGCCATGTCTAGGCATTTTTGCAGCTTGAGAGATGCTATAATGTCACACATCCATATGGAGAAAAGAAAACTCTCGCAAGATTCACCTAAAATCAATAATATTGGATTATCTCAACTAAGCTTATCTGATAGAGATATCAGACCAAGTACAAGGATGACAAAAAGCCTACGACAACTGTGGAGACCCATGAGAGGCCTGCCTGAAAATTCTGTAGCAATCCTTCGTTCTTGGCTTTTTCAACACTTTCTCCACCCCTATCCTAATGACTCTGAAAAACTCATGCTGGCATCCCAGGCAGGTTTGACTAAAAATCAAGTCTCAAACTGGTTCATAAATGCTCGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAGAGAAGAGTTTGGCGACTCTTCTTCGGCGGATTCCAATCCTCCTGCTAATGAGTATTAG 1071 0.4118 MPNSIRGRDQFGNLDFDACGSSLRSMNVFPEAFPSIHSVSIGDRISRPEDLVQALALAEGSESEINHTTHLMNLLERNHPPHCPSSSYGTQSSAASIIANSTYLKPLQSLLQEFVDVGGIVNDECVDQLFRGSGIGASRLSSELKAKLCNNELLLVEKHELVMKIAKLIDLLDEVEGRYEKYYHELEEAVSSFEMITGVGAAKCYTDLALMAMSRHFCSLRDAIMSHIHMEKRKLSQDSPKINNIGLSQLSLSDRDIRPSTRMTKSLRQLWRPMRGLPENSVAILRSWLFQHFLHPYPNDSEKLMLASQAGLTKNQVSNWFINARVRLWKPMIEEMYREEFGDSSSADSNPPANEY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3658 356 CDD homeodomain 271 332 IPR001356 GO:0003677
Sto9g3658 356 Pfam Associated with HOX 97 225 IPR006563 -
Sto9g3658 356 SMART prehox3 92 226 IPR006563 -
Sto9g3658 356 SUPERFAMILY Homeodomain-like 276 340 IPR009057 -
Sto9g3658 356 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 90 347 - -
Sto9g3658 356 ProSiteProfiles 'Homeobox' domain profile. 268 331 IPR001356 GO:0003677
Sto9g3658 356 SMART HOX_1 271 335 IPR001356 GO:0003677
Sto9g3658 356 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 347 - -
Sto9g3658 356 Pfam Homeobox KN domain 288 327 IPR008422 GO:0003677|GO:0006355
Sto9g3658 356 Gene3D - 268 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3658 Sto-Chr9 35056355 35057698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3658 90 345 Homeobox Transcription Factor Family AT1G19700 47.601 2.68e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sto9g3658 POX 2.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3658 - - cam:101491993 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3658 9 35056355 35057698 Sto9g3658 9 35056355 35057698 ECH