Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3553 ATGCCTCAACTTTTGTTCTTGATGCTATTAGTATCTTCATGGATATGGACAAAAGCAAACGCCGGAGAAAGAGGAAGCATTAATTGCTTAGGCTCGCCACCCAACATTGTGAAGATAGGTGCTGTCATTGACTTCACTTCACGCCTTGGTAAGGAGCAAAAGATAGCCATGGAAATTGCAGTGCAAGATGTGAATCGTCTCACTTCTTCTAAGCTTGTTCTCAAGTTCCATAATTCTGGTGGAAACCCTGCAACCGCTGTCTCAACTGTTGTAGATCTTGCAAAGAGGAAAGAAGTGGAAGCTGTGATAGGATCACAACTGAATGAAGCAAGTTTGGTCTCCAAGATTGATAAAGCCTCAAAGAACCTACCTATCATTTCCTTAACTGCCAGCCAAGAATTGAAACCCTTTCAATTGCCTTACTTCATCCAGATGGCTAATGATATTTCCCTTCACTTGCAATGCATTGCAGCCATCGTTGGCCACTTCAGGTGGCGAAAGGTGACTGCAATTTACCAACATAGCAACAATGGCAATGGCCTTCCCTCTTCTAATTTTCCGGAGATTTTATCTCATCTCTCTAGTTTCCTTCGCATTGTTAATTCTGATATTGATGAACATTTAGCTTTCCCCTCTTTGGCTTCCCTTTTAGACTTGGAAGCCATTATAGAAGAGAAGCTCAGGAATGTGGAGAGCAAGAGCGATAATAGGGTATTCCTTATTATTCAATCTTCCTTAGAGTTTGCCACTCTGCTTTTTGAGAAGGCTAACCAAATGGGACTTATGGAAAAAGGCTCCGTGTGGATCATCCCCGATGATGTAGCTAGCCATCTTGATTCTGTGGATGCATCTGTTTACTTGAACATGCAGGGAGTTATTGGATGCAAAAGCAACTTCATAGACACAAGCCACAAGTTCAAACAGTTGAAGCTGAAATTCCGTAGGAAATTTGCATTGAAATACCCAAAAGAAGAAACCCCACAGCCAAATATGTTTGCACTTCGAGCTTATGATACCATTCATGCCATTTCTATTGCCGTCATGAAATCACAAGGAAGATGTTTGGAGGAGGAATTATCAAAAAATATCTTATCCAGTGATTTTGAAGGTCTGAGTGGGAAGATAAGCTTCAGAAACAGAGAATTACAGGAATTAACGAGCTTTAAGATAGTTAATGTATTTGGAAAAGGTTACAAAGAGGTAGCGTACTGGTCACCCACATTTGGGTTCTCAGCCTCAGGGAACAAGACGAGGGACAAAACAACAAGTGGGAATGACTCTGCTGGAGTTGTGGGTCCCATGAATTGGCCAGGTGGGTTACAAACAGTTCCAAGGGGATTTGTTTATGGTAATAAGGACAAGCCTTTAAAGATTGGGGTCCCTGCTAATGGGGCCTGCTCTCAGCTTTTGAGTGTGAGCTACGATCATCAGAGGCAGAATCAAAGCCATGTGTCTGGTTTTTCTATCGATGTCTTTAACGCTGCTCTGGGACGCCTGCCTTATAATTTGCACTTTTACTTTGTTCCCTTCAATGGCACTTATGAAGATTTGATTCGGCAAGATTTTCATGGTGCTGTAGGTGATATCGAAATAATATCCCAACGATATGAGTATGTGCAATTTACGCATCCCTATGACGAAATAATATCCCAACGATATGAGTATGTGCAATTTACGCATCCCTATGACGATTCCGGCATTGCGATGATAGTGAGAGTAAAAGCAGATAGATCCAAAGAGACGTGGATGTTCATGCTGGCCTTTACAAAAGAAATGTGGCTGTTAATGGCAGCGATGCACCTCTTCATATCATTTTCCGTCTGGGTCATTGAAGATGGAGATAACTCTGAGTTAAGAGGATTGGGGGCCATGCTTTGGTTCTCTGTCACCATGTTATTCTTTGCACATAGAGAACCCGTGAGAGGCAACCTGGCCCGACTTGTGCTGGCACCTTGGTTGTTTGTGATTCTGATAGTAACCTCAAGTTTCACTGCAAGCCTCACATCTATGATCACAGTGTCCCAACTGGAACCATCTGTGCCAGATATACAGACACTTCAGAGGACAAATGCAATTGTAGGATGCAATAGGAGATCTTTCATGGTCAATTATTTGATTGATGAGTTGAAATTCAAGAGTGAGAACATCAGGAAATTTGATTCCATTGCCGATTACCCAAGAGCCTTCGAGAACAAAGAAATTGCCGCAGCTTTCTTAATTGCTCCTCAAGCTCAAGTCTTCCTTGCTACATATTGTAAAGGCTACGTCCAAGCAGGATCCACCTTGAAGCTCGGTGGTTTAGCCTTTGCATTCCCTAAATCTGCAACTTCAAGTTTGGCAATAGACATGTCAGAGGCAATCCTAAAAGTGATAGAATGTCGACTAGTAGAAGAATTAAAGAAAGATATGCTATCCAGCACCAATTGCGCCACttcaaatgaaaaattacaAGAACAGCAATTAGGTCCTCGACCCTTCTTTGGGCTATTCTATATTTCAGGGGGCACTGCTATTTTAGGTTTGTCAATCACTCTAGTGCCTTGTGTGGGAAAGAAAGTACACAAGTTGATGAGCCGCGTAGAAGCAGCTTTATTACTACGAATCGGAAGCATGAGAAGCAAGCTTATCCCACGTACAAATAGCACTGGTAGTGATGGGGATGGGGAGACTACACACAACCACCAAACCTTAGCTACTAATACTGTTGATTCTATTCAGCACTAA 2724 0.4214 MPQLLFLMLLVSSWIWTKANAGERGSINCLGSPPNIVKIGAVIDFTSRLGKEQKIAMEIAVQDVNRLTSSKLVLKFHNSGGNPATAVSTVVDLAKRKEVEAVIGSQLNEASLVSKIDKASKNLPIISLTASQELKPFQLPYFIQMANDISLHLQCIAAIVGHFRWRKVTAIYQHSNNGNGLPSSNFPEILSHLSSFLRIVNSDIDEHLAFPSLASLLDLEAIIEEKLRNVESKSDNRVFLIIQSSLEFATLLFEKANQMGLMEKGSVWIIPDDVASHLDSVDASVYLNMQGVIGCKSNFIDTSHKFKQLKLKFRRKFALKYPKEETPQPNMFALRAYDTIHAISIAVMKSQGRCLEEELSKNILSSDFEGLSGKISFRNRELQELTSFKIVNVFGKGYKEVAYWSPTFGFSASGNKTRDKTTSGNDSAGVVGPMNWPGGLQTVPRGFVYGNKDKPLKIGVPANGACSQLLSVSYDHQRQNQSHVSGFSIDVFNAALGRLPYNLHFYFVPFNGTYEDLIRQDFHGAVGDIEIISQRYEYVQFTHPYDEIISQRYEYVQFTHPYDDSGIAMIVRVKADRSKETWMFMLAFTKEMWLLMAAMHLFISFSVWVIEDGDNSELRGLGAMLWFSVTMLFFAHREPVRGNLARLVLAPWLFVILIVTSSFTASLTSMITVSQLEPSVPDIQTLQRTNAIVGCNRRSFMVNYLIDELKFKSENIRKFDSIADYPRAFENKEIAAAFLIAPQAQVFLATYCKGYVQAGSTLKLGGLAFAFPKSATSSLAIDMSEAILKVIECRLVEELKKDMLSSTNCATSNEKLQEQQLGPRPFFGLFYISGGTAILGLSITLVPCVGKKVHKLMSRVEAALLLRIGSMRSKLIPRTNSTGSDGDGETTHNHQTLATNTVDSIQH 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3553 907 Pfam Receptor family ligand binding region 54 392 IPR001828 -
Sto9g3553 907 Gene3D - 577 718 - -
Sto9g3553 907 Gene3D - 150 328 - -
Sto9g3553 907 MobiDBLite consensus disorder prediction 876 907 - -
Sto9g3553 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 545 - -
Sto9g3553 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 547 865 - -
Sto9g3553 907 PIRSF IGluLR_plant 546 906 IPR017103 -
Sto9g3553 907 PIRSF IGluLR_plant 1 548 IPR017103 -
Sto9g3553 907 Pfam Bacterial extracellular solute-binding proteins, family 3 550 789 IPR001638 -
Sto9g3553 907 SUPERFAMILY Periplasmic binding protein-like I 32 446 IPR028082 -
Sto9g3553 907 SMART GluR_14 457 806 IPR001320 GO:0015276|GO:0016020
Sto9g3553 907 Pfam Ligand-gated ion channel 790 835 IPR001320 GO:0015276|GO:0016020
Sto9g3553 907 CDD PBP1_GABAb_receptor_plant 38 413 IPR044440 -
Sto9g3553 907 Gene3D - 35 149 - -
Sto9g3553 907 SUPERFAMILY Periplasmic binding protein-like II 480 802 - -
Sto9g3553 907 Gene3D - 451 551 - -
Sto9g3553 907 PANTHER GLUTAMATE RECEPTOR 35 545 - -
Sto9g3553 907 PANTHER GLUTAMATE RECEPTOR 547 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3553 Sto-Chr9 34498977 34502118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3553 29 875 Ion Channels AT2G29120 29.563 8.54e-104 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3553 - - gmx:100781045 913.294