Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3550 atgaacttgaAGAACTCCCGAAATGATCCTGCGGCGGCCCATAACAACGGCGGCGGAAAGCCACCGGGGAATTTTCCCCTGGCGCGAGAACCGTCCGTCTACTCTCTCACATTCGATGAATTCATGAGTAGCATGGGAGGTTCAGGAAAGGACTTTGGGTCCATGAACATGGATGAGTTGCTCAAGAACATATGGACAGCTGAAGAAATTCAAACAATGGCTTCCATTACGACCGGTGGTGTTCAACAAGGGGCTGGTGCCCCTACTGGTGGCCATTTGCAGAAACAAGGCTCTCTGACGCTGCCACGAACACTTAGCCAGAAGACAGTGGATGAGGTTTGGAAGGACATTTCCAAGGATGGTCATGAGAGTGCTACGGGTTCCGGAGGCCCCAATTTGCCACAGAGGCAGCAGACTTTGGGAGAGATGACGCTGGAGGAGTTCTTGGTCAGAGCCGGAGTTGTAAGAGAAGATATGCAGTTAGGTGGAAAGCCTAACGTtggagttttcgccgatttatCTCGTATAGGAAATAATAGTGGTTTAGGAATGGGTTTTCAGCAGTTCAATAAGAGTCCGGGGTTAATGGGAAATTCCATTCCAGCTGGGAATAATGATCGTCTCACTCTTCAGTCAGCCACCAATTTGCCTTTGAATGTGAACGGAGTTAGATCGAATCAGCAACAGCTTCCTAATTCACAGACGCCACAGATACTTCCTAAGCAGCCTGCTATGGCTTATGCGACTCAGATACCATTGGGGAATCAAGGAATGAGGGGTGGGATTGTGGGACTTTCGGATCAGGGTCTTAATGGTACTATGGTTCCTGCTTCTGCACCGCAAGGAGGAGGCATGGGATTAGGACATGGGGTTGTTCACGTAGCTACAGCATCACCAATTAATCAACTGTCTTGTGATGAACATGGAAAGAGTAATGGTGATACTTCATCAGTATCGCCAGTTCCTTATGTCTTCCATGGTGCTTTAAGGGGGAGGAGGAGCTGTGGAGCTGTGGAGAAGGTAATTGAAAGGAGGCAGAGGAGAATGATAAAGAATAGAGAATCAGCTGCTAGGTCACGGGCCCGCAAGCAGGCAGAAATCATGGAACTTCAGAAGAACCAATTTGACCTTATTTGTTATTACTCATCTGGCGACAACTTTTACTACGGTTGA 1173 0.4714 MNLKNSRNDPAAAHNNGGGKPPGNFPLAREPSVYSLTFDEFMSSMGGSGKDFGSMNMDELLKNIWTAEEIQTMASITTGGVQQGAGAPTGGHLQKQGSLTLPRTLSQKTVDEVWKDISKDGHESATGSGGPNLPQRQQTLGEMTLEEFLVRAGVVREDMQLGGKPNVGVFADLSRIGNNSGLGMGFQQFNKSPGLMGNSIPAGNNDRLTLQSATNLPLNVNGVRSNQQQLPNSQTPQILPKQPAMAYATQIPLGNQGMRGGIVGLSDQGLNGTMVPASAPQGGGMGLGHGVVHVATASPINQLSCDEHGKSNGDTSSVSPVPYVFHGALRGRRSCGAVEKVIERRQRRMIKNRESAARSRARKQAEIMELQKNQFDLICYYSSGDNFYYG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3550 390 Pfam bZIP transcription factor 344 372 IPR004827 GO:0003700|GO:0006355
Sto9g3550 390 Gene3D - 342 377 - -
Sto9g3550 390 Coils Coil 353 373 - -
Sto9g3550 390 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 5 371 IPR043452 GO:0003700|GO:0045893
Sto9g3550 390 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 371 - -
Sto9g3550 390 MobiDBLite consensus disorder prediction 1 28 - -
Sto9g3550 390 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 347 362 IPR004827 GO:0003700|GO:0006355
Sto9g3550 390 SUPERFAMILY Leucine zipper domain 344 373 IPR046347 GO:0003700|GO:0006355
Sto9g3550 390 CDD bZIP_plant_BZIP46 344 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3550 Sto-Chr9 34486132 34488357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3550 27 368 bZIP Transcription Factor Family AT1G45249 53.444 1.27e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto9g3550 bZIP_1 7.3e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3550 K14432 - jre:108979552 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3550 9 34486132 34488357 Sto9g3550 9 34486132 34488357 ECH