Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3543 ATGACGAACTATGCCTTTCTGAACGACCAGCTCTCGAAGCATACCTCAATTTTTGGGTTACGACTATGGGTGGTGCTGGGCATATGCGTAGGAGCAGCCATAGTGCTTGTACTGTTTCTCATTTCACTCTGGTTCACTTCCAGGCGCAACAATTCTTCCAACCACAACCCCACTAACACTATCCCAAATGTATCTAAGGAAATCCCAATTGACCCTTATGGCGACCCAACCCATCCGAAATCCGATCCTAATCCGGAAGCGGAGGCCGTACCAGCTCTTGATAGGCTTGTAGAGCAGGAGGACGAAAGCCACAGAATTCTCATAGAAATTGGTAAGGATCACCGGATTTCATACCCTGAGAGAGGCGGAGCTTCATCGCATGGCAGCGGGGAGCCTGAGGTTTCCCATTTGGGTTGGGGGCATTGGTATAGTCTTAGAGAGCTTGACCTCTCTACCAATGGATTCGCTGAGGAGAATGTCATAGGCGAAGGTGGCTACGGAATTGTTTATCGCGGAGTGTTGCAGGACGATACCAAGGTTGCTGTGAAAAATTTGCTGAATAACAGAGGACAAGCTGAGAAGGAATTCAAGGTAGAAGTTGAAGCGATTGGACGTGTACGGCACAAGAATTTGGTGAGGTTACTTGGATACTGTGTTGAAGGAGCTCATAGGATGCTTGTGTACGAGTATGTTGACAAAGGAAACCTAGAACGGTGGCTTCACGGAGATGTTGGACCTTCTAGCCCTCTCACCTGGGAGATTCGCATGAATATATTACTTGGAACTGCAAAAGGGTTGACATACCTTCATGAGGGGCTTGAACCCAAAGTGGTTCACCGTGATATCAAGTCAAGCAACATATTGCTCGATAAGCAATGGAATCCAAAAGTTTCTGATTTTGGCCTTGCAAAGCTCTTGGTATCGGAGAGAACTTATGTGACCACCCGTGTGATGGGAACATTTGGGTATGTGGCTCCAGAATATGCAAGTACCGGCATGTTAAATGAAAGAAGTGATGTGTATAGTTTTGGGGTTCTTATTATGGAGATAATATCTGGGAGAAACCCAGTAGATTACAGCCGCCCTCCCGGAGAGGTGAACCTTGTTGAGTGGCTGAAGACATTGGTTACTAACCGAAATGCAGAAGCAGTGCTTGATCCTAGGCTACCTGAGAAGCCTTCTTCTAGGGCACTGAAGCGAGCTTTGTTAGTTGCTTTAAGGTGCGTGGATCCGAATGCCCAGAAAAGACCAAAGATGGGGCATGTTACACATATGCTTGAAGCTGATGAATTCCCTTTTCGAGATGACCGTCGAATTGGGAGGGAAAATGGACGCTCCCTGCGGGAGAACACAAGAGATAGGTTGATGGAGAAGCAAAAACTGAAGACCAGTAGCCATACTAGAACTGATGTATTAGATTGTGAAGCAACACACATTTGCCTTTGGGTTTTAGCATACCTCGAGGCACTTTAA 1473 0.4664 MTNYAFLNDQLSKHTSIFGLRLWVVLGICVGAAIVLVLFLISLWFTSRRNNSSNHNPTNTIPNVSKEIPIDPYGDPTHPKSDPNPEAEAVPALDRLVEQEDESHRILIEIGKDHRISYPERGGASSHGSGEPEVSHLGWGHWYSLRELDLSTNGFAEENVIGEGGYGIVYRGVLQDDTKVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAHRMLVYEYVDKGNLERWLHGDVGPSSPLTWEIRMNILLGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLVSERTYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLIMEIISGRNPVDYSRPPGEVNLVEWLKTLVTNRNAEAVLDPRLPEKPSSRALKRALLVALRCVDPNAQKRPKMGHVTHMLEADEFPFRDDRRIGRENGRSLRENTRDRLMEKQKLKTSSHTRTDVLDCEATHICLWVLAYLEAL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3543 490 SUPERFAMILY Protein kinase-like (PK-like) 132 427 IPR011009 -
Sto9g3543 490 Pfam Protein kinase domain 156 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g3543 490 SMART serkin_6 155 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g3543 490 CDD STKc_IRAK 161 427 - -
Sto9g3543 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Sto9g3543 490 Gene3D Phosphorylase Kinase; domain 1 135 230 - -
Sto9g3543 490 MobiDBLite consensus disorder prediction 52 87 - -
Sto9g3543 490 ProSiteProfiles Protein kinase domain profile. 155 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g3543 490 PANTHER OS01G0323000 PROTEIN 5 468 - -
Sto9g3543 490 Gene3D Transferase(Phosphotransferase) domain 1 231 438 - -
Sto9g3543 490 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Sto9g3543 490 PANTHER RECEPTOR-LIKE KINASE PLANT 5 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3543 Sto-Chr9 34440227 34442486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3543 24 478 Trihelix Transcription Factor Family AT5G38560 38.544 1.69e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sto9g3543 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3543 - - vvi:100243696 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3543 9 34440227 34442486 Sto2g0703 2 5991241 5994666 ECH
Sto9g3543 9 34440227 34442486 Sto10g0174 10 1429560 1432505 ECH
Sto9g3543 9 34440227 34442486 Sto9g3543 9 34440227 34442486 ECH