Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3540 ATGATGCAATTGTACAACATGGGAAGCATGAAGGTTCATGAGGTGGCACGTGGATTGTGGGAGCAGGAACCCTCCCTCACGCTTGGGTGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTCCCTACTGATTCTGTTACTGCTTTGGATCTGAAGAGCTTCATCAGACCCCAAAGTGGCCCCAGAAAACTGCCTTCCACTACTACCAACAAAGATTCACCCCTGCAGCTGCAGGTACGGGCGGGAGGAAGTCGGTGGAATCCGACGCAAGAACAGATAGGGATATTGGAGATGCTGTACAGAGGTGGGATGCGAACTCCAAATGCTCAACAGATAGAGCACATCACAGCTCAGCTTGGCAAGTACGGCAAGATTGAAGGCAAGAATGTTTTCTACTGGTTTCAAAACCACAAAGCCCGCGAACGCCAAAAGCACAAACGCAACCTTCACCCTACTACTACTCCACCTAATTCCCTAATTACAACTATCACTTTGGACACACCGGTGCAGGTGCAGGGGAAAGTAATATTCATGGAAAGACAGGAAGATGGTAAGCCGTTGAGGAAGAAGTGCTGTAGCAACTGGGGATTATTTGCAAAAGAAAGCCGATGGTTATGTCAAGAGGAGGAGCAACATACAACTCTCGAGCTTTTCCCATTGCACCCCGAAATTAAACCACGTAGTGAAGGGGTTTCACTTTCACACTAA 705 0.4879 MMQLYNMGSMKVHEVARGLWEQEPSLTLGCKRLRPLAPKLPTDSVTALDLKSFIRPQSGPRKLPSTTTNKDSPLQLQVRAGGSRWNPTQEQIGILEMLYRGGMRTPNAQQIEHITAQLGKYGKIEGKNVFYWFQNHKARERQKHKRNLHPTTTPPNSLITTITLDTPVQVQGKVIFMERQEDGKPLRKKCCSNWGLFAKESRWLCQEEEQHTTLELFPLHPEIKPRSEGVSLSH 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3540 234 Pfam Homeodomain 83 142 IPR001356 GO:0003677
Sto9g3540 234 ProSiteProfiles 'Homeobox' domain profile. 78 143 IPR001356 GO:0003677
Sto9g3540 234 SUPERFAMILY Homeodomain-like 78 150 IPR009057 -
Sto9g3540 234 PANTHER WUSCHEL-RELATED HOMEOBOX 4 10 224 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Sto9g3540 234 Gene3D - 82 148 - -
Sto9g3540 234 SMART HOX_1 80 147 IPR001356 GO:0003677
Sto9g3540 234 CDD homeodomain 84 144 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3540 Sto-Chr9 34422385 34423202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3540 10 174 Wox Gene Family AT1G46480 56.831 7.00e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Sto9g3540 Homeodomain 9.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3540 - - tcc:18591159 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3540 9 34422385 34423202 Sto9g3540 9 34422385 34423202 ECH