Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3515 TTGCCTCCGTCCTCGTCTTTGCCCTCCTCACTTCTCCTCTGTAATCCAATCCAGAACCATAAGGAGATGGAGACTCGCGCAGCAAAGAGGAGGGCTGATGCCGCCGGCTTAGCTCGTAACAAGTCTCTCAAAAGGAAGCGGGTGGTGTTAGGAGAGCTTCCCAATTTTTCCAATCTTACTGATCCTCCAGCTCTGAATTCGGGGTTGCACCCACAAAAGCCCAAGTCTCGAAAGAATACGAGGGTCAAGAGGTCCGTGGCGGGAAAAGATAGCCTCTCTTTGGGGGATTCCAAGTTGGATGATGCCAAGCTCAAGGTGAAGAATGCAGTTGATTGTCATGCCAATTTGGATGATCCACAAAGTAGCCAGCCTTATGTTTCCGACATTTATACTTATCTGCGCAAAATGGAGATGGAGCCAAAGAGAAGACCAATACCTGACTATCTGGAGAAAGTTCAAAAAGATGTTACTGCCAACATGAGAGGAGTATTGGTTGATTGGTTAGTGGAAGTCGCAGAGGAGTACAAGCTTCTACCGGACACGCTTTACCTTTCTGTTTCATACATTGATCGCTTCCTTTCTACTAATCAAGTTGTCAGGCAGAGACTTCAGTTGCTGGGTGTTTCATCCATGTTCATTGCATCGAAGTATGAAGAAATTAGTCCTCCCCATGTGGAAGAATTCTGCCACATCACTGATAATACATACTCAAAGGCACAGGTTGTAGAAATGGAGGCTGCGATACTCAAGTCCCTTAAGTTTGAAATGGGCAATCCTACTGTAAAGACATTTCTAAGGAGCTTTGTTGGTTTTGCTTCTGAAAACCTACATTTTGAGTTTCTTGGCTGTTATCTTGCCGAGCTAAGTTTGTTGGATTACAACTGTATTAAATTCTTACCTTCCCTAGTGGCTGCTTCAGCCATATTTCTTGCAAGATTTATCATCCATCCTGATGTGCATCCCTGGGATTCTGCCCTGCAAGAATGCACTGGGTATAAATCAGCTGAGTTGAAAGAATGTGTACTCATCCTACATGGCTTGTATTTGGCAAGAAGAGGAGGGTCTTTGCAGGCTATACGGGAGAAATACAAACAGCACAAGTTCAAATATGTGGCAATGCTGCCTTCTCCTCCAGAGATCCCTATTTCTTACTTTGAAGAAGTGTAG 1167 0.4456 LPPSSSLPSSLLLCNPIQNHKEMETRAAKRRADAAGLARNKSLKRKRVVLGELPNFSNLTDPPALNSGLHPQKPKSRKNTRVKRSVAGKDSLSLGDSKLDDAKLKVKNAVDCHANLDDPQSSQPYVSDIYTYLRKMEMEPKRRPIPDYLEKVQKDVTANMRGVLVDWLVEVAEEYKLLPDTLYLSVSYIDRFLSTNQVVRQRLQLLGVSSMFIASKYEEISPPHVEEFCHITDNTYSKAQVVEMEAAILKSLKFEMGNPTVKTFLRSFVGFASENLHFEFLGCYLAELSLLDYNCIKFLPSLVAASAIFLARFIIHPDVHPWDSALQECTGYKSAELKECVLILHGLYLARRGGSLQAIREKYKQHKFKYVAMLPSPPEIPISYFEEV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3515 388 CDD CYCLIN 259 345 IPR013763 -
Sto9g3515 388 SUPERFAMILY Cyclin-like 117 256 IPR036915 -
Sto9g3515 388 Pfam Cyclin, N-terminal domain 128 256 IPR006671 -
Sto9g3515 388 Gene3D - 144 257 - -
Sto9g3515 388 PANTHER CYCLINS 38 387 IPR039361 -
Sto9g3515 388 MobiDBLite consensus disorder prediction 54 89 - -
Sto9g3515 388 CDD CYCLIN 160 249 IPR013763 -
Sto9g3515 388 SMART Cyclin_C_2 259 377 IPR004367 -
Sto9g3515 388 SMART cyclin_7 166 250 IPR013763 -
Sto9g3515 388 SMART cyclin_7 263 346 IPR013763 -
Sto9g3515 388 Gene3D - 128 373 - -
Sto9g3515 388 SUPERFAMILY Cyclin-like 259 379 IPR036915 -
Sto9g3515 388 Pfam Cyclin, C-terminal domain 259 376 IPR004367 -
Sto9g3515 388 ProSitePatterns Cyclins signature. 161 192 IPR006671 -
Sto9g3515 388 PANTHER CYCLIN-A3-1-RELATED 38 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3515 Sto-Chr9 34307440 34309266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3515 18 388 Core Cell Cycle Gene Families AT5G43080 55.795 1.07e-142 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3515 K06627 - pvy:116125667 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3515 9 34307440 34309266 Sto9g3515 9 34307440 34309266 ECH