Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3514 ATGGGGAGAGTGAAACTTCAGATCAAGAAGATTGAGAACTTAACAAATAGGCAGGTCACTTTCTCAAAGAGAAGGAATGGACTCATCAAGAAAGCTTACGAACTTTCTGTTCTCTGTGATGTTGATGTGGCTCTAATTATGTTTTCCCCCTCTGGGAGACCATGTCTCTTCTCTAGGACCAAAAGCCCGATAATCAACCCAGACTCCAACCTTATAAAGGAAATTAATAAGGAGATTTGTATTTGCAAGTCTCAATTGAAAGATATGGAGGCGAGGCTAAGgaTATTCGAAGGAGACCCTTGTGAAATCTCAACGCTGTGTGAGGCTGAATATCGTGAATTTGTCCTTCTGGAAACCCTAAGACATGTGCAGCTGCGAAAAGCTTTAGATGTATGTGGAATTGGCAGCGGAAGCTCAAACAAGTTAGCGGAGTGGTATGGGGAGGGAGATCATGAGCAGATTGAGATAATGGATTGGAATGGCTTACTTCCTCCGAGTCACACTCACAGAGATGAAGAATCAGAGACGATGGCAGTAGTGCATGGCCATGGAACTAGTAGTGGAGATGGGAGTGATcagaataataatgattttgatagcAAGTCCTCGTCCCCTTGGGAACAACTCCAACCTCCTCCACCTCCTCCAGGAATTACTGCGTCTTTTCCAGATAATGGAGACGCGGGGGAAGGACTACAACTACTTGATctctatttttctcattttgacCGCTAA 735 0.4218 MGRVKLQIKKIENLTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRPCLFSRTKSPIINPDSNLIKEINKEICICKSQLKDMEARLRIFEGDPCEISTLCEAEYREFVLLETLRHVQLRKALDVCGIGSGSSNKLAEWYGEGDHEQIEIMDWNGLLPPSHTHRDEESETMAVVHGHGTSSGDGSDQNNNDFDSKSSSPWEQLQPPPPPPGITASFPDNGDAGEGLQLLDLYFSHFDR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3514 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto9g3514 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto9g3514 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto9g3514 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto9g3514 244 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Sto9g3514 244 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Sto9g3514 244 MobiDBLite consensus disorder prediction 186 206 - -
Sto9g3514 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 70 186 - -
Sto9g3514 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 62 - -
Sto9g3514 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto9g3514 244 MobiDBLite consensus disorder prediction 161 230 - -
Sto9g3514 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Sto9g3514 244 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Sto9g3514 244 PANTHER MADS BOX PROTEIN 1 62 - -
Sto9g3514 244 PANTHER MADS BOX PROTEIN 70 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3514 Sto-Chr9 34300538 34302656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3514 1 127 Type I MADS-box Gene Family AT1G22130 41.436 5.17e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto9g3514 SRF-TF 2.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3514 - - mtr:MTR_3g102570 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3514 9 34300538 34302656 Sto9g3514 9 34300538 34302656 ECH