Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3501 ATGAGCTGCAACGGTTGTCGAGTCCTCCGGAAGAGGTGCAGCGATGAGTGCGTTCTGAGGTCGTGCCTGCAGTGGATCCATTCCCCCGCAGCTCAAGCCCACGCCACTCTCTTCCTTGCCAAATTCTTCGGCCGCACCGATCTCATCTCCTTCATTTCCTCCGTTCCCCTAACCACCAGACCAGccTTGTTTCAGTCTCTGCTGTACGAAGCGTGCGGCCGAACCGTGAATCCCGTCAACGGTTCCGTAGGACTCCTGTGGACTGGTAACTGGCACGTCTGCCAGGCAGCCGTGGAGACCATACTCGCCGGAGGAGTTCTTCAGCCGATGTTGGATCAGTCTTCCTCTGACACTATCCATAGCATTGGGACCAGTGTAGGATCTCAATCCCGCCCATCCATGGATGATCTCAGAGTGAGAGAGATGAATCAGAAACCGGCCTTCCATCTCTCTCTGCTTCCGGAGTCTTACGCGGCGTTAAGGAGGCAGAGTAATCAGGCTATGTCGTTGGTTTCTGCAGAATACAGAGATGAGAAGAATAAGCTTTTGAATCTGTTCGTTtga 564 0.5337 MSCNGCRVLRKRCSDECVLRSCLQWIHSPAAQAHATLFLAKFFGRTDLISFISSVPLTTRPALFQSLLYEACGRTVNPVNGSVGLLWTGNWHVCQAAVETILAGGVLQPMLDQSSSDTIHSIGTSVGSQSRPSMDDLRVREMNQKPAFHLSLLPESYAALRRQSNQAMSLVSAEYRDEKNKLLNLFV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3501 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 186 - -
Sto9g3501 187 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Sto9g3501 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 186 - -
Sto9g3501 187 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3501 Sto-Chr9 34248945 34249595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3501 1 110 AS2 family AT3G49940 76.364 2.84e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto9g3501 LOB 2.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3501 - - gmx:100796966 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3501 9 34248945 34249595 Sto2g0510 2 4384070 4385905 ECH
Sto9g3501 9 34248945 34249595 Sto9g3501 9 34248945 34249595 ECH